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dbVar

Database of genomic structural variation

nsv965935

Organism: Homo sapiens

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:7,266

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 178 SVs from 44 studies. See in: genome view

Remapped(Score: Perfect):23,187,502-23,194,767

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv965935	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000020.11	Chr20	23,187,502	23,194,767
nsv965935	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000020.10	Chr20	23,168,139	23,175,404
nsv965935	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000020.9	Chr20	23,116,139	23,123,404

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2761621	deletion	HGDP00456	Sequencing	Read depth	1	17,189
nssv2764583	deletion	HGDP00927	Sequencing	Read depth	1	17,185

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2761621	Remapped	Perfect	NC_000020.11:g.(?_ 23187502)_(2319476 7_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	23,187,502	23,194,767
nssv2764583	Remapped	Perfect	NC_000020.11:g.(?_ 23187502)_(2319476 7_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	23,187,502	23,194,767
nssv2761621	Remapped	Perfect	NC_000020.10:g.(?_ 23168139)_(2317540 4_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	23,168,139	23,175,404
nssv2764583	Remapped	Perfect	NC_000020.10:g.(?_ 23168139)_(2317540 4_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	23,168,139	23,175,404
nssv2761621	Submitted genomic		NC_000020.9:g.(?_2 3116139)_(23123404 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	23,116,139	23,123,404
nssv2764583	Submitted genomic		NC_000020.9:g.(?_2 3116139)_(23123404 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	23,116,139	23,123,404

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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