Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv966555

Organism: Homo sapiens

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:7,093

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 322 SVs from 69 studies. See in: genome view

Remapped(Score: Perfect):21,367,829-21,374,921

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv966555	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	21,367,829	21,374,921
nsv966555	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	21,369,452	21,376,544
nsv966555	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	20,978,550	20,985,642

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2763419	deletion	HGDP00456	Sequencing	Read depth	1	17,189
nssv2765227	deletion	HGDP01284	Sequencing	Read depth	1	17,196

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2763419	Remapped	Perfect	NC_000004.12:g.(?_ 21367829)_(2137492 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	21,367,829	21,374,921
nssv2765227	Remapped	Perfect	NC_000004.12:g.(?_ 21367829)_(2137492 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	21,367,829	21,374,921
nssv2763419	Remapped	Perfect	NC_000004.11:g.(?_ 21369452)_(2137654 4_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	21,369,452	21,376,544
nssv2765227	Remapped	Perfect	NC_000004.11:g.(?_ 21369452)_(2137654 4_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	21,369,452	21,376,544
nssv2763419	Submitted genomic		NC_000004.10:g.(?_ 20978550)_(2098564 2_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	20,978,550	20,985,642
nssv2765227	Submitted genomic		NC_000004.10:g.(?_ 20978550)_(2098564 2_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	20,978,550	20,985,642

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI