nsv971960
- Organism: Homo sapiens
- Study:nstd82 (Sudmant et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:22,464
- Publication(s):Sudmant et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 575 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 575 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 382 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv971960 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 107,357,727 | 107,380,190 |
| nsv971960 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 107,228,453 | 107,250,916 |
| nsv971960 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 106,733,663 | 106,756,126 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv2761234 | deletion | HGDP00456 | Sequencing | Read depth | 1 | 17,189 |
| nssv2761453 | deletion | HGDP00665 | Sequencing | Read depth | 1 | 17,185 |
| nssv2761546 | deletion | HGDP00521 | Sequencing | Read depth | 1 | 17,171 |
| nssv2762320 | duplication | HGDP00927 | Sequencing | Read depth | 3 | 17,185 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2761234 | Remapped | Perfect | NC_000011.10:g.(?_ 107357727)_(107380 190_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,357,727 | 107,380,190 |
| nssv2761453 | Remapped | Perfect | NC_000011.10:g.(?_ 107357727)_(107380 190_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,357,727 | 107,380,190 |
| nssv2761546 | Remapped | Perfect | NC_000011.10:g.(?_ 107357727)_(107380 190_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,357,727 | 107,380,190 |
| nssv2762320 | Remapped | Perfect | NC_000011.10:g.(?_ 107357727)_(107380 190_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,357,727 | 107,380,190 |
| nssv2761234 | Remapped | Perfect | NC_000011.9:g.(?_1 07228453)_(1072509 16_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,228,453 | 107,250,916 |
| nssv2761453 | Remapped | Perfect | NC_000011.9:g.(?_1 07228453)_(1072509 16_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,228,453 | 107,250,916 |
| nssv2761546 | Remapped | Perfect | NC_000011.9:g.(?_1 07228453)_(1072509 16_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,228,453 | 107,250,916 |
| nssv2762320 | Remapped | Perfect | NC_000011.9:g.(?_1 07228453)_(1072509 16_?)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,228,453 | 107,250,916 |
| nssv2761234 | Submitted genomic | NC_000011.8:g.(?_1 06733663)_(1067561 26_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,733,663 | 106,756,126 | ||
| nssv2761453 | Submitted genomic | NC_000011.8:g.(?_1 06733663)_(1067561 26_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,733,663 | 106,756,126 | ||
| nssv2761546 | Submitted genomic | NC_000011.8:g.(?_1 06733663)_(1067561 26_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,733,663 | 106,756,126 | ||
| nssv2762320 | Submitted genomic | NC_000011.8:g.(?_1 06733663)_(1067561 26_?)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,733,663 | 106,756,126 |