Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv972230

Organism: Homo sapiens

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:76,958

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1728 SVs from 88 studies. See in: genome view

Remapped(Score: Perfect):39,368,872-39,445,829

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv972230	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	39,368,872	39,445,829
nsv972230	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000008.10	Chr8	39,226,391	39,303,348
nsv972230	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000008.9	Chr8	39,345,548	39,422,505

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2758502	deletion	HGDP01284	Sequencing	Read depth	1	17,196
nssv2759585	deletion	HGDP00665	Sequencing	Read depth	0	17,185
nssv2759742	deletion	HGDP00521	Sequencing	Read depth	0	17,171

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2758502	Remapped	Perfect	NC_000008.11:g.(?_ 39368872)_(3944582 9_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	39,368,872	39,445,829
nssv2759585	Remapped	Perfect	NC_000008.11:g.(?_ 39368872)_(3944582 9_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	39,368,872	39,445,829
nssv2759742	Remapped	Perfect	NC_000008.11:g.(?_ 39368872)_(3944582 9_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	39,368,872	39,445,829
nssv2758502	Remapped	Perfect	NC_000008.10:g.(?_ 39226391)_(3930334 8_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	39,226,391	39,303,348
nssv2759585	Remapped	Perfect	NC_000008.10:g.(?_ 39226391)_(3930334 8_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	39,226,391	39,303,348
nssv2759742	Remapped	Perfect	NC_000008.10:g.(?_ 39226391)_(3930334 8_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	39,226,391	39,303,348
nssv2758502	Submitted genomic		NC_000008.9:g.(?_3 9345548)_(39422505 _?)del	NCBI36 (hg18)		NC_000008.9	Chr8	39,345,548	39,422,505
nssv2759585	Submitted genomic		NC_000008.9:g.(?_3 9345548)_(39422505 _?)del	NCBI36 (hg18)		NC_000008.9	Chr8	39,345,548	39,422,505
nssv2759742	Submitted genomic		NC_000008.9:g.(?_3 9345548)_(39422505 _?)del	NCBI36 (hg18)		NC_000008.9	Chr8	39,345,548	39,422,505

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI