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dbVar

Database of genomic structural variation

nsv975801

Organism: Homo sapiens

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:18,621

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 322 SVs from 63 studies. See in: genome view

Remapped(Score: Perfect):89,179,164-89,197,784

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv975801	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	89,179,164	89,197,784
nsv975801	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	90,938,921	90,957,541
nsv975801	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000010.9	Chr10	90,928,901	90,947,521

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2760305	deletion	HGDP00778	Sequencing	Read depth	1	17,185
nssv2765185	deletion	HGDP01307	Sequencing	Read depth	1	17,161

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2760305	Remapped	Perfect	NC_000010.11:g.(?_ 89179164)_(8919778 4_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	89,179,164	89,197,784
nssv2765185	Remapped	Perfect	NC_000010.11:g.(?_ 89179164)_(8919778 4_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	89,179,164	89,197,784
nssv2760305	Remapped	Perfect	NC_000010.10:g.(?_ 90938921)_(9095754 1_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	90,938,921	90,957,541
nssv2765185	Remapped	Perfect	NC_000010.10:g.(?_ 90938921)_(9095754 1_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	90,938,921	90,957,541
nssv2760305	Submitted genomic		NC_000010.9:g.(?_9 0928901)_(90947521 _?)del	NCBI36 (hg18)		NC_000010.9	Chr10	90,928,901	90,947,521
nssv2765185	Submitted genomic		NC_000010.9:g.(?_9 0928901)_(90947521 _?)del	NCBI36 (hg18)		NC_000010.9	Chr10	90,928,901	90,947,521

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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