nsv979361
- Organism: Homo sapiens
- Study:nstd82 (Sudmant et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:78,697
- Publication(s):Sudmant et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 390 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 390 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 100 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv979361 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 78,177,155 | 78,255,851 |
| nsv979361 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 78,404,281 | 78,482,977 |
| nsv979361 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 78,257,789 | 78,336,485 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv2761139 | deletion | HGDP00542 | Sequencing | Read depth | 1 | 17,157 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2761139 | Remapped | Perfect | NC_000002.12:g.(?_ 78177155)_(7825585 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 78,177,155 | 78,255,851 |
| nssv2761139 | Remapped | Perfect | NC_000002.11:g.(?_ 78404281)_(7848297 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 78,404,281 | 78,482,977 |
| nssv2761139 | Submitted genomic | NC_000002.10:g.(?_ 78257789)_(7833648 5_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 78,257,789 | 78,336,485 |