nsv981351
- Organisms: Homo sapiens ssp. Denisova, Homo sapiens
- Study:nstd82 (Sudmant et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:34,396
- Publication(s):Sudmant et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2680 SVs from 90 studies. See in: genome view
Overlapping variant regions from other studies: 2680 SVs from 90 studies. See in: genome view
Overlapping variant regions from other studies: 1763 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv981351 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 32,484,334 | 32,518,729 |
| nsv981351 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 32,452,111 | 32,486,506 |
| nsv981351 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 32,560,089 | 32,594,484 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv2757037 | deletion | HGDP01284 | Sequencing | Read depth | 1 | 17,196 |
| nssv2757067 | deletion | HGDP00927 | Sequencing | Read depth | 1 | 17,185 |
| nssv2758260 | deletion | HGDP00665 | Sequencing | Read depth | 1 | 17,185 |
| nssv2759362 | deletion | HGDP00998 | Sequencing | Read depth | 1 | 17,267 |
| nssv2759866 | deletion | Homo_denisova-Denisova_30x | Sequencing | Read depth | 1 | 19,139 |
| nssv2764024 | deletion | HGDP00521 | Sequencing | Read depth | 1 | 17,171 |
| nssv2764973 | deletion | HGDP00542 | Sequencing | Read depth | 1 | 17,157 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2757037 | Remapped | Perfect | NC_000006.12:g.(?_ 32484334)_(3251872 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,484,334 | 32,518,729 |
| nssv2757067 | Remapped | Perfect | NC_000006.12:g.(?_ 32484334)_(3251872 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,484,334 | 32,518,729 |
| nssv2758260 | Remapped | Perfect | NC_000006.12:g.(?_ 32484334)_(3251872 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,484,334 | 32,518,729 |
| nssv2759362 | Remapped | Perfect | NC_000006.12:g.(?_ 32484334)_(3251872 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,484,334 | 32,518,729 |
| nssv2759866 | Remapped | Perfect | NC_000006.12:g.(?_ 32484334)_(3251872 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,484,334 | 32,518,729 |
| nssv2764024 | Remapped | Perfect | NC_000006.12:g.(?_ 32484334)_(3251872 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,484,334 | 32,518,729 |
| nssv2764973 | Remapped | Perfect | NC_000006.12:g.(?_ 32484334)_(3251872 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,484,334 | 32,518,729 |
| nssv2757037 | Remapped | Perfect | NC_000006.11:g.(?_ 32452111)_(3248650 6_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,452,111 | 32,486,506 |
| nssv2757067 | Remapped | Perfect | NC_000006.11:g.(?_ 32452111)_(3248650 6_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,452,111 | 32,486,506 |
| nssv2758260 | Remapped | Perfect | NC_000006.11:g.(?_ 32452111)_(3248650 6_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,452,111 | 32,486,506 |
| nssv2759362 | Remapped | Perfect | NC_000006.11:g.(?_ 32452111)_(3248650 6_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,452,111 | 32,486,506 |
| nssv2759866 | Remapped | Perfect | NC_000006.11:g.(?_ 32452111)_(3248650 6_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,452,111 | 32,486,506 |
| nssv2764024 | Remapped | Perfect | NC_000006.11:g.(?_ 32452111)_(3248650 6_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,452,111 | 32,486,506 |
| nssv2764973 | Remapped | Perfect | NC_000006.11:g.(?_ 32452111)_(3248650 6_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,452,111 | 32,486,506 |
| nssv2757037 | Submitted genomic | NC_000006.10:g.(?_ 32560089)_(3259448 4_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,560,089 | 32,594,484 | ||
| nssv2757067 | Submitted genomic | NC_000006.10:g.(?_ 32560089)_(3259448 4_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,560,089 | 32,594,484 | ||
| nssv2758260 | Submitted genomic | NC_000006.10:g.(?_ 32560089)_(3259448 4_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,560,089 | 32,594,484 | ||
| nssv2759362 | Submitted genomic | NC_000006.10:g.(?_ 32560089)_(3259448 4_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,560,089 | 32,594,484 | ||
| nssv2759866 | Submitted genomic | NC_000006.10:g.(?_ 32560089)_(3259448 4_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,560,089 | 32,594,484 | ||
| nssv2764024 | Submitted genomic | NC_000006.10:g.(?_ 32560089)_(3259448 4_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,560,089 | 32,594,484 | ||
| nssv2764973 | Submitted genomic | NC_000006.10:g.(?_ 32560089)_(3259448 4_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,560,089 | 32,594,484 |