nsv982899
- Organisms: Homo sapiens ssp. Denisova, Homo sapiens
- Study:nstd82 (Sudmant et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,586
- Publication(s):Sudmant et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 360 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 360 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 180 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv982899 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 76,488,132 | 76,498,717 |
| nsv982899 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 78,247,890 | 78,258,475 |
| nsv982899 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 77,917,896 | 77,928,481 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv2758628 | deletion | HGDP00665 | Sequencing | Read depth | 1 | 17,185 |
| nssv2761306 | deletion | Homo_denisova-Denisova_30x | Sequencing | Read depth | 1 | 19,139 |
| nssv2762219 | deletion | HGDP00998 | Sequencing | Read depth | 0 | 17,267 |
| nssv2763748 | deletion | HGDP00456 | Sequencing | Read depth | 1 | 17,189 |
| nssv2763883 | deletion | HGDP00778 | Sequencing | Read depth | 1 | 17,185 |
| nssv2765236 | deletion | HGDP01307 | Sequencing | Read depth | 1 | 17,161 |
| nssv2765845 | deletion | HGDP00521 | Sequencing | Read depth | 0 | 17,171 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2758628 | Remapped | Perfect | NC_000010.11:g.(?_ 76488132)_(7649871 7_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 76,488,132 | 76,498,717 |
| nssv2761306 | Remapped | Perfect | NC_000010.11:g.(?_ 76488132)_(7649871 7_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 76,488,132 | 76,498,717 |
| nssv2762219 | Remapped | Perfect | NC_000010.11:g.(?_ 76488132)_(7649871 7_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 76,488,132 | 76,498,717 |
| nssv2763748 | Remapped | Perfect | NC_000010.11:g.(?_ 76488132)_(7649871 7_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 76,488,132 | 76,498,717 |
| nssv2763883 | Remapped | Perfect | NC_000010.11:g.(?_ 76488132)_(7649871 7_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 76,488,132 | 76,498,717 |
| nssv2765236 | Remapped | Perfect | NC_000010.11:g.(?_ 76488132)_(7649871 7_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 76,488,132 | 76,498,717 |
| nssv2765845 | Remapped | Perfect | NC_000010.11:g.(?_ 76488132)_(7649871 7_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 76,488,132 | 76,498,717 |
| nssv2758628 | Remapped | Perfect | NC_000010.10:g.(?_ 78247890)_(7825847 5_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 78,247,890 | 78,258,475 |
| nssv2761306 | Remapped | Perfect | NC_000010.10:g.(?_ 78247890)_(7825847 5_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 78,247,890 | 78,258,475 |
| nssv2762219 | Remapped | Perfect | NC_000010.10:g.(?_ 78247890)_(7825847 5_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 78,247,890 | 78,258,475 |
| nssv2763748 | Remapped | Perfect | NC_000010.10:g.(?_ 78247890)_(7825847 5_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 78,247,890 | 78,258,475 |
| nssv2763883 | Remapped | Perfect | NC_000010.10:g.(?_ 78247890)_(7825847 5_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 78,247,890 | 78,258,475 |
| nssv2765236 | Remapped | Perfect | NC_000010.10:g.(?_ 78247890)_(7825847 5_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 78,247,890 | 78,258,475 |
| nssv2765845 | Remapped | Perfect | NC_000010.10:g.(?_ 78247890)_(7825847 5_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 78,247,890 | 78,258,475 |
| nssv2758628 | Submitted genomic | NC_000010.9:g.(?_7 7917896)_(77928481 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 77,917,896 | 77,928,481 | ||
| nssv2761306 | Submitted genomic | NC_000010.9:g.(?_7 7917896)_(77928481 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 77,917,896 | 77,928,481 | ||
| nssv2762219 | Submitted genomic | NC_000010.9:g.(?_7 7917896)_(77928481 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 77,917,896 | 77,928,481 | ||
| nssv2763748 | Submitted genomic | NC_000010.9:g.(?_7 7917896)_(77928481 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 77,917,896 | 77,928,481 | ||
| nssv2763883 | Submitted genomic | NC_000010.9:g.(?_7 7917896)_(77928481 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 77,917,896 | 77,928,481 | ||
| nssv2765236 | Submitted genomic | NC_000010.9:g.(?_7 7917896)_(77928481 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 77,917,896 | 77,928,481 | ||
| nssv2765845 | Submitted genomic | NC_000010.9:g.(?_7 7917896)_(77928481 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 77,917,896 | 77,928,481 |