nsv984572
- Organism: Homo sapiens
- Study:nstd91 (Sallustio et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:26,949
- Publication(s):Sallustio et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 235 SVs from 41 studies. See in: genome view
Overlapping variant regions from other studies: 235 SVs from 41 studies. See in: genome view
Overlapping variant regions from other studies: 103 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv984572 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 178,310,014 | 178,336,962 |
| nsv984572 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 177,737,015 | 177,763,963 |
| nsv984572 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 177,669,621 | 177,696,569 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
|---|---|---|---|---|---|---|
| nssv3217108 | copy number loss | SNP array | SNP genotyping analysis | Glomerulonephritis, IGA | association | Submitter |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3217108 | Remapped | Perfect | NC_000005.10:g.(17 8310014_?)_(?_1783 36962)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 178,310,014 | 178,336,962 |
| nssv3217108 | Remapped | Perfect | NC_000005.9:g.(177 737015_?)_(?_17776 3963)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 177,737,015 | 177,763,963 |
| nssv3217108 | Submitted genomic | NC_000005.8:g.(177 669621_?)_(?_17769 6569)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 177,669,621 | 177,696,569 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
|---|---|---|---|---|---|
| nssv3217108 | NCBI36: NC_000005.8:g.(177669621_?)_(?_177696569)del | copy number loss | Glomerulonephritis, IGA | association | Submitter |