nsv992775
- Organism: Homo sapiens
- Study:nstd94 (Helman et al. 2014)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Helman et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 950 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 951 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv992775 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 1,274,604 | 1,274,604 |
| nsv992775 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000023.10 | ChrX | 1,393,497 | 1,393,497 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3380939 | mobile element insertion | TCGA-CN-4741 | Sequencing | Split read and paired-end mapping | 1,041 |
| nssv3380940 | mobile element insertion | TCGA-CV-6961 | Sequencing | Split read and paired-end mapping | 1,102 |
| nssv3380941 | mobile element insertion | TCGA-26-5132 | Sequencing | Split read and paired-end mapping | 1,130 |
| nssv3380942 | mobile element insertion | TCGA-27-1831 | Sequencing | Split read and paired-end mapping | 1,170 |
| nssv3380943 | mobile element insertion | TCGA-AB-2969 | Sequencing | Split read and paired-end mapping | 689 |
| nssv3380944 | mobile element insertion | TCGA-CJ-4899 | Sequencing | Split read and paired-end mapping | 919 |
| nssv3380945 | mobile element insertion | TCGA-AO-A03L | Sequencing | Split read and paired-end mapping | 1,079 |
| nssv3380946 | mobile element insertion | TCGA-AR-A0TX | Sequencing | Split read and paired-end mapping | 1,128 |
| nssv3380947 | mobile element insertion | TCGA-BH-A18R | Sequencing | Split read and paired-end mapping | 1,162 |
| nssv3380948 | mobile element insertion | TCGA-C8-A12Q | Sequencing | Split read and paired-end mapping | 1,051 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3380939 | Remapped | Perfect | NC_000023.11:g.127 4604_1274605ins? | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 1,274,604 | 1,274,604 |
| nssv3380940 | Remapped | Perfect | NC_000023.11:g.127 4604_1274605ins? | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 1,274,604 | 1,274,604 |
| nssv3380941 | Remapped | Perfect | NC_000023.11:g.127 4604_1274605ins? | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 1,274,604 | 1,274,604 |
| nssv3380942 | Remapped | Perfect | NC_000023.11:g.127 4604_1274605ins? | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 1,274,604 | 1,274,604 |
| nssv3380943 | Remapped | Perfect | NC_000023.11:g.127 4604_1274605ins? | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 1,274,604 | 1,274,604 |
| nssv3380944 | Remapped | Perfect | NC_000023.11:g.127 4604_1274605ins? | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 1,274,604 | 1,274,604 |
| nssv3380945 | Remapped | Perfect | NC_000023.11:g.127 4604_1274605ins? | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 1,274,604 | 1,274,604 |
| nssv3380946 | Remapped | Perfect | NC_000023.11:g.127 4604_1274605ins? | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 1,274,604 | 1,274,604 |
| nssv3380947 | Remapped | Perfect | NC_000023.11:g.127 4604_1274605ins? | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 1,274,604 | 1,274,604 |
| nssv3380948 | Remapped | Perfect | NC_000023.11:g.127 4604_1274605ins? | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 1,274,604 | 1,274,604 |
| nssv3380939 | Submitted genomic | NC_000023.10:g.139 3497_1393498ins? | GRCh37 (hg19) | NC_000023.10 | ChrX | 1,393,497 | 1,393,497 | ||
| nssv3380940 | Submitted genomic | NC_000023.10:g.139 3497_1393498ins? | GRCh37 (hg19) | NC_000023.10 | ChrX | 1,393,497 | 1,393,497 | ||
| nssv3380941 | Submitted genomic | NC_000023.10:g.139 3497_1393498ins? | GRCh37 (hg19) | NC_000023.10 | ChrX | 1,393,497 | 1,393,497 | ||
| nssv3380942 | Submitted genomic | NC_000023.10:g.139 3497_1393498ins? | GRCh37 (hg19) | NC_000023.10 | ChrX | 1,393,497 | 1,393,497 | ||
| nssv3380943 | Submitted genomic | NC_000023.10:g.139 3497_1393498ins? | GRCh37 (hg19) | NC_000023.10 | ChrX | 1,393,497 | 1,393,497 | ||
| nssv3380944 | Submitted genomic | NC_000023.10:g.139 3497_1393498ins? | GRCh37 (hg19) | NC_000023.10 | ChrX | 1,393,497 | 1,393,497 | ||
| nssv3380945 | Submitted genomic | NC_000023.10:g.139 3497_1393498ins? | GRCh37 (hg19) | NC_000023.10 | ChrX | 1,393,497 | 1,393,497 | ||
| nssv3380946 | Submitted genomic | NC_000023.10:g.139 3497_1393498ins? | GRCh37 (hg19) | NC_000023.10 | ChrX | 1,393,497 | 1,393,497 | ||
| nssv3380947 | Submitted genomic | NC_000023.10:g.139 3497_1393498ins? | GRCh37 (hg19) | NC_000023.10 | ChrX | 1,393,497 | 1,393,497 | ||
| nssv3380948 | Submitted genomic | NC_000023.10:g.139 3497_1393498ins? | GRCh37 (hg19) | NC_000023.10 | ChrX | 1,393,497 | 1,393,497 |