nsv993367
- Organism: Homo sapiens
- Study:nstd94 (Helman et al. 2014)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:18
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Helman et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 246 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 246 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv993367 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nsv993367 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3371748 | mobile element insertion | TCGA-60-2726 | Sequencing | Split read and paired-end mapping | 300 |
| nssv3371749 | mobile element insertion | TCGA-CR-6487 | Sequencing | Split read and paired-end mapping | 1,163 |
| nssv3371750 | mobile element insertion | TCGA-CN-5365 | Sequencing | Split read and paired-end mapping | 893 |
| nssv3371751 | mobile element insertion | TCGA-CR-5250 | Sequencing | Split read and paired-end mapping | 1,025 |
| nssv3371752 | mobile element insertion | TCGA-CV-7180 | Sequencing | Split read and paired-end mapping | 1,136 |
| nssv3371753 | mobile element insertion | TCGA-02-2483 | Sequencing | Split read and paired-end mapping | 1,174 |
| nssv3371754 | mobile element insertion | TCGA-06-2557 | Sequencing | Split read and paired-end mapping | 1,217 |
| nssv3371755 | mobile element insertion | TCGA-15-1444 | Sequencing | Split read and paired-end mapping | 982 |
| nssv3371756 | mobile element insertion | TCGA-AB-2974 | Sequencing | Split read and paired-end mapping | 695 |
| nssv3371757 | mobile element insertion | TCGA-A3-3370 | Sequencing | Split read and paired-end mapping | 867 |
| nssv3371758 | mobile element insertion | TCGA-A3-3372 | Sequencing | Split read and paired-end mapping | 973 |
| nssv3371759 | mobile element insertion | TCGA-CJ-5682 | Sequencing | Split read and paired-end mapping | 1,162 |
| nssv3371760 | mobile element insertion | TCGA-CJ-6033 | Sequencing | Split read and paired-end mapping | 1,342 |
| nssv3371761 | mobile element insertion | TCGA-A2-A04T | Sequencing | Split read and paired-end mapping | 895 |
| nssv3371762 | mobile element insertion | TCGA-A2-A0D2 | Sequencing | Split read and paired-end mapping | 968 |
| nssv3371763 | mobile element insertion | TCGA-A2-A0D0 | Sequencing | Split read and paired-end mapping | 1,020 |
| nssv3371764 | mobile element insertion | TCGA-AO-A03N | Sequencing | Split read and paired-end mapping | 1,110 |
| nssv3371765 | mobile element insertion | TCGA-BH-A0B3 | Sequencing | Split read and paired-end mapping | 888 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3371748 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371749 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371750 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371751 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371752 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371753 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371754 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371755 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371756 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371757 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371758 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371759 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371760 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371761 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371762 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371763 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371764 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371765 | Remapped | Perfect | NC_000022.11:g.462 27154_46227155ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 46,227,154 | 46,227,154 |
| nssv3371748 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371749 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371750 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371751 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371752 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371753 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371754 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371755 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371756 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371757 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371758 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371759 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371760 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371761 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371762 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371763 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371764 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 | ||
| nssv3371765 | Submitted genomic | NC_000022.10:g.466 23051_46623052ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 46,623,051 | 46,623,051 |