nsv993378
- Organism: Homo sapiens
- Study:nstd94 (Helman et al. 2014)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Helman et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 113 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 113 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv993378 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000022.11 | Chr22 | 28,855,292 | 28,855,292 |
| nsv993378 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000022.10 | Chr22 | 29,251,280 | 29,251,280 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3392274 | mobile element insertion | TCGA-CR-6482 | Sequencing | Split read and paired-end mapping | 1,338 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3392274 | Remapped | Perfect | NC_000022.11:g.288 55292_28855293ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 28,855,292 | 28,855,292 |
| nssv3392274 | Submitted genomic | NC_000022.10:g.292 51280_29251281ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 29,251,280 | 29,251,280 |