Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv993380

Organism: Homo sapiens

Study:nstd94 (Helman et al. 2014)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Helman et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 139 SVs from 26 studies. See in: genome view

Remapped(Score: Perfect):38,546,721-38,546,721

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv993380	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	38,546,721	38,546,721
nsv993380	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	39,037,361	39,037,361

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3385752	mobile element insertion	TCGA-56-1622	Sequencing	Split read and paired-end mapping	883
nssv3385753	mobile element insertion	TCGA-06-0686	Sequencing	Split read and paired-end mapping	1,228
nssv3385754	mobile element insertion	TCGA-15-1444	Sequencing	Split read and paired-end mapping	982
nssv3385755	mobile element insertion	TCGA-13-0725	Sequencing	Split read and paired-end mapping	803
nssv3385756	mobile element insertion	TCGA-13-0890	Sequencing	Split read and paired-end mapping	1,187
nssv3385757	mobile element insertion	TCGA-AF-2689	Sequencing	Split read and paired-end mapping	1,018
nssv3385758	mobile element insertion	TCGA-AG-3593	Sequencing	Split read and paired-end mapping	1,139

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv3385752	Remapped	Perfect	NC_000019.10:g.385 46721_38546722ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	38,546,721	38,546,721
nssv3385753	Remapped	Perfect	NC_000019.10:g.385 46721_38546722ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	38,546,721	38,546,721
nssv3385754	Remapped	Perfect	NC_000019.10:g.385 46721_38546722ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	38,546,721	38,546,721
nssv3385755	Remapped	Perfect	NC_000019.10:g.385 46721_38546722ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	38,546,721	38,546,721
nssv3385756	Remapped	Perfect	NC_000019.10:g.385 46721_38546722ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	38,546,721	38,546,721
nssv3385757	Remapped	Perfect	NC_000019.10:g.385 46721_38546722ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	38,546,721	38,546,721
nssv3385758	Remapped	Perfect	NC_000019.10:g.385 46721_38546722ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	38,546,721	38,546,721
nssv3385752	Submitted genomic		NC_000019.9:g.3903 7361_39037362ins?	GRCh37 (hg19)		NC_000019.9	Chr19	39,037,361	39,037,361
nssv3385753	Submitted genomic		NC_000019.9:g.3903 7361_39037362ins?	GRCh37 (hg19)		NC_000019.9	Chr19	39,037,361	39,037,361
nssv3385754	Submitted genomic		NC_000019.9:g.3903 7361_39037362ins?	GRCh37 (hg19)		NC_000019.9	Chr19	39,037,361	39,037,361
nssv3385755	Submitted genomic		NC_000019.9:g.3903 7361_39037362ins?	GRCh37 (hg19)		NC_000019.9	Chr19	39,037,361	39,037,361
nssv3385756	Submitted genomic		NC_000019.9:g.3903 7361_39037362ins?	GRCh37 (hg19)		NC_000019.9	Chr19	39,037,361	39,037,361
nssv3385757	Submitted genomic		NC_000019.9:g.3903 7361_39037362ins?	GRCh37 (hg19)		NC_000019.9	Chr19	39,037,361	39,037,361
nssv3385758	Submitted genomic		NC_000019.9:g.3903 7361_39037362ins?	GRCh37 (hg19)		NC_000019.9	Chr19	39,037,361	39,037,361

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI