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dbVar

Database of genomic structural variation

nsv993383

Organism: Homo sapiens

Study:nstd94 (Helman et al. 2014)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Helman et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 199 SVs from 31 studies. See in: genome view

Remapped(Score: Perfect):918,717-918,717

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv993383	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000020.11	Chr20	918,717	918,717
nsv993383	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000020.10	Chr20	899,360	899,360

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3391975	mobile element insertion	TCGA-A2-A04P	Sequencing	Split read and paired-end mapping	1,030
nssv3391976	mobile element insertion	TCGA-A2-A0D0	Sequencing	Split read and paired-end mapping	1,020

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv3391975	Remapped	Perfect	NC_000020.11:g.918 717_918718ins?	GRCh38.p12	First Pass	NC_000020.11	Chr20	918,717	918,717
nssv3391976	Remapped	Perfect	NC_000020.11:g.918 717_918718ins?	GRCh38.p12	First Pass	NC_000020.11	Chr20	918,717	918,717
nssv3391975	Submitted genomic		NC_000020.10:g.899 360_899361ins?	GRCh37 (hg19)		NC_000020.10	Chr20	899,360	899,360
nssv3391976	Submitted genomic		NC_000020.10:g.899 360_899361ins?	GRCh37 (hg19)		NC_000020.10	Chr20	899,360	899,360

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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