nsv993392
- Organism: Homo sapiens
- Study:nstd94 (Helman et al. 2014)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:41
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Helman et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 189 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 191 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv993392 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nsv993392 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3343570 | mobile element insertion | TCGA-22-1016 | Sequencing | Split read and paired-end mapping | 218 |
| nssv3343571 | mobile element insertion | TCGA-43-3920 | Sequencing | Split read and paired-end mapping | 675 |
| nssv3343572 | mobile element insertion | TCGA-56-1622 | Sequencing | Split read and paired-end mapping | 883 |
| nssv3343573 | mobile element insertion | TCGA-60-2722 | Sequencing | Split read and paired-end mapping | 383 |
| nssv3343574 | mobile element insertion | TCGA-66-2756 | Sequencing | Split read and paired-end mapping | 914 |
| nssv3343575 | mobile element insertion | TCGA-60-2719 | Sequencing | Split read and paired-end mapping | 667 |
| nssv3343576 | mobile element insertion | TCGA-BB-4225 | Sequencing | Split read and paired-end mapping | 660 |
| nssv3343577 | mobile element insertion | TCGA-CR-6472 | Sequencing | Split read and paired-end mapping | 1,043 |
| nssv3343578 | mobile element insertion | TCGA-CR-6482 | Sequencing | Split read and paired-end mapping | 1,338 |
| nssv3343579 | mobile element insertion | TCGA-CV-6961 | Sequencing | Split read and paired-end mapping | 1,102 |
| nssv3343580 | mobile element insertion | TCGA-CV-7100 | Sequencing | Split read and paired-end mapping | 1,023 |
| nssv3343581 | mobile element insertion | TCGA-BA-6873 | Sequencing | Split read and paired-end mapping | 1,110 |
| nssv3343582 | mobile element insertion | TCGA-CR-5250 | Sequencing | Split read and paired-end mapping | 1,025 |
| nssv3343583 | mobile element insertion | TCGA-CR-6467 | Sequencing | Split read and paired-end mapping | 1,106 |
| nssv3343584 | mobile element insertion | TCGA-CV-6433 | Sequencing | Split read and paired-end mapping | 903 |
| nssv3343585 | mobile element insertion | TCGA-AP-A053 | Sequencing | Split read and paired-end mapping | 1,035 |
| nssv3343586 | mobile element insertion | TCGA-AP-A05D | Sequencing | Split read and paired-end mapping | 993 |
| nssv3343587 | mobile element insertion | TCGA-05-4397 | Sequencing | Split read and paired-end mapping | 676 |
| nssv3343588 | mobile element insertion | TCGA-38-4630 | Sequencing | Split read and paired-end mapping | 726 |
| nssv3343589 | mobile element insertion | TCGA-44-2665 | Sequencing | Split read and paired-end mapping | 683 |
| nssv3343590 | mobile element insertion | TCGA-44-6148 | Sequencing | Split read and paired-end mapping | 943 |
| nssv3343591 | mobile element insertion | TCGA-50-6597 | Sequencing | Split read and paired-end mapping | 1,089 |
| nssv3343592 | mobile element insertion | TCGA-55-1596 | Sequencing | Split read and paired-end mapping | 268 |
| nssv3343593 | mobile element insertion | TCGA-55-6986 | Sequencing | Split read and paired-end mapping | 1,151 |
| nssv3343594 | mobile element insertion | TCGA-55-7281 | Sequencing | Split read and paired-end mapping | 1,016 |
| nssv3343595 | mobile element insertion | TCGA-06-0686 | Sequencing | Split read and paired-end mapping | 1,228 |
| nssv3343596 | mobile element insertion | TCGA-06-5415 | Sequencing | Split read and paired-end mapping | 1,088 |
| nssv3343597 | mobile element insertion | TCGA-26-5135 | Sequencing | Split read and paired-end mapping | 1,101 |
| nssv3343598 | mobile element insertion | TCGA-AB-2969 | Sequencing | Split read and paired-end mapping | 689 |
| nssv3343599 | mobile element insertion | TCGA-CJ-4639 | Sequencing | Split read and paired-end mapping | 1,227 |
| nssv3343600 | mobile element insertion | TCGA-CJ-4899 | Sequencing | Split read and paired-end mapping | 919 |
| nssv3343601 | mobile element insertion | TCGA-CJ-4918 | Sequencing | Split read and paired-end mapping | 937 |
| nssv3343602 | mobile element insertion | TCGA-CJ-5682 | Sequencing | Split read and paired-end mapping | 1,162 |
| nssv3343603 | mobile element insertion | TCGA-A2-A04X | Sequencing | Split read and paired-end mapping | 1,058 |
| nssv3343604 | mobile element insertion | TCGA-A8-A07B | Sequencing | Split read and paired-end mapping | 1,037 |
| nssv3343605 | mobile element insertion | TCGA-A2-A04T | Sequencing | Split read and paired-end mapping | 895 |
| nssv3343606 | mobile element insertion | TCGA-A2-A0D2 | Sequencing | Split read and paired-end mapping | 968 |
| nssv3343607 | mobile element insertion | TCGA-A8-A08L | Sequencing | Split read and paired-end mapping | 922 |
| nssv3343608 | mobile element insertion | TCGA-AO-A03L | Sequencing | Split read and paired-end mapping | 1,079 |
| nssv3343609 | mobile element insertion | TCGA-AO-A0J2 | Sequencing | Split read and paired-end mapping | 1,031 |
| nssv3343610 | mobile element insertion | TCGA-B6-A0RU | Sequencing | Split read and paired-end mapping | 865 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3343570 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343571 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343572 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343573 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343574 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343575 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343576 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343577 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343578 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343579 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343580 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343581 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343582 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343583 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343584 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343585 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343586 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343587 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343588 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343589 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343590 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343591 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343592 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343593 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343594 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343595 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343596 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343597 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343598 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343599 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343600 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343601 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343602 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343603 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343604 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343605 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343606 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343607 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343608 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343609 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343610 | Remapped | Perfect | NC_000022.11:g.180 28762_18028763ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,028,762 | 18,028,762 |
| nssv3343570 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343571 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343572 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343573 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343574 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343575 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343576 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343577 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343578 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343579 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343580 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343581 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343582 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343583 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343584 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343585 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343586 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343587 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343588 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343589 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343590 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343591 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343592 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343593 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343594 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343595 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343596 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343597 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343598 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343599 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343600 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343601 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343602 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343603 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343604 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343605 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343606 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343607 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343608 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343609 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 | ||
| nssv3343610 | Submitted genomic | NC_000022.10:g.185 11528_18511529ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 18,511,528 | 18,511,528 |