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dbVar

Database of genomic structural variation

nsv993396

Organism: Homo sapiens

Study:nstd94 (Helman et al. 2014)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Helman et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 205 SVs from 19 studies. See in: genome view

Remapped(Score: Perfect):42,332,804-42,332,804

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv993396	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000018.10	Chr18	42,332,804	42,332,804
nsv993396	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000018.9	Chr18	39,912,769	39,912,769

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3390835	mobile element insertion	TCGA-CV-5443	Sequencing	Split read and paired-end mapping	1,331
nssv3390836	mobile element insertion	TCGA-49-4510	Sequencing	Split read and paired-end mapping	740

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv3390835	Remapped	Perfect	NC_000018.10:g.423 32804_42332805ins?	GRCh38.p12	First Pass	NC_000018.10	Chr18	42,332,804	42,332,804
nssv3390836	Remapped	Perfect	NC_000018.10:g.423 32804_42332805ins?	GRCh38.p12	First Pass	NC_000018.10	Chr18	42,332,804	42,332,804
nssv3390835	Submitted genomic		NC_000018.9:g.3991 2769_39912770ins?	GRCh37 (hg19)		NC_000018.9	Chr18	39,912,769	39,912,769
nssv3390836	Submitted genomic		NC_000018.9:g.3991 2769_39912770ins?	GRCh37 (hg19)		NC_000018.9	Chr18	39,912,769	39,912,769

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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