nsv993400
- Organism: Homo sapiens
- Study:nstd94 (Helman et al. 2014)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:34
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Helman et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 139 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 139 SVs from 37 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv993400 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nsv993400 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv3351692 | mobile element insertion | TCGA-21-1082 | Sequencing | Split read and paired-end mapping | 605 |
nssv3351693 | mobile element insertion | TCGA-CR-6480 | Sequencing | Split read and paired-end mapping | 908 |
nssv3351694 | mobile element insertion | TCGA-CV-6961 | Sequencing | Split read and paired-end mapping | 1,102 |
nssv3351695 | mobile element insertion | TCGA-BA-4076 | Sequencing | Split read and paired-end mapping | 1,051 |
nssv3351696 | mobile element insertion | TCGA-BA-6873 | Sequencing | Split read and paired-end mapping | 1,110 |
nssv3351697 | mobile element insertion | TCGA-CN-4737 | Sequencing | Split read and paired-end mapping | 1,125 |
nssv3351698 | mobile element insertion | TCGA-CV-7090 | Sequencing | Split read and paired-end mapping | 927 |
nssv3351699 | mobile element insertion | TCGA-CV-7255 | Sequencing | Split read and paired-end mapping | 909 |
nssv3351700 | mobile element insertion | TCGA-AP-A0LE | Sequencing | Split read and paired-end mapping | 971 |
nssv3351701 | mobile element insertion | TCGA-AX-A1CI | Sequencing | Split read and paired-end mapping | 1,089 |
nssv3351702 | mobile element insertion | TCGA-05-4420 | Sequencing | Split read and paired-end mapping | 554 |
nssv3351703 | mobile element insertion | TCGA-50-6597 | Sequencing | Split read and paired-end mapping | 1,089 |
nssv3351704 | mobile element insertion | TCGA-55-1594 | Sequencing | Split read and paired-end mapping | 721 |
nssv3351705 | mobile element insertion | TCGA-73-4659 | Sequencing | Split read and paired-end mapping | 739 |
nssv3351706 | mobile element insertion | TCGA-75-5147 | Sequencing | Split read and paired-end mapping | 1,151 |
nssv3351707 | mobile element insertion | TCGA-02-2485 | Sequencing | Split read and paired-end mapping | 1,277 |
nssv3351708 | mobile element insertion | TCGA-06-5415 | Sequencing | Split read and paired-end mapping | 1,088 |
nssv3351709 | mobile element insertion | TCGA-19-2624 | Sequencing | Split read and paired-end mapping | 1,059 |
nssv3351710 | mobile element insertion | TCGA-26-5135 | Sequencing | Split read and paired-end mapping | 1,101 |
nssv3351711 | mobile element insertion | TCGA-27-1831 | Sequencing | Split read and paired-end mapping | 1,170 |
nssv3351712 | mobile element insertion | TCGA-CZ-4856 | Sequencing | Split read and paired-end mapping | 121 |
nssv3351713 | mobile element insertion | TCGA-B2-4101 | Sequencing | Split read and paired-end mapping | 933 |
nssv3351714 | mobile element insertion | TCGA-CJ-4918 | Sequencing | Split read and paired-end mapping | 937 |
nssv3351715 | mobile element insertion | TCGA-CJ-5682 | Sequencing | Split read and paired-end mapping | 1,162 |
nssv3351716 | mobile element insertion | TCGA-24-0982 | Sequencing | Split read and paired-end mapping | 651 |
nssv3351717 | mobile element insertion | TCGA-13-0890 | Sequencing | Split read and paired-end mapping | 1,187 |
nssv3351718 | mobile element insertion | TCGA-A1-A0SM | Sequencing | Split read and paired-end mapping | 1,136 |
nssv3351719 | mobile element insertion | TCGA-A8-A08S | Sequencing | Split read and paired-end mapping | 984 |
nssv3351720 | mobile element insertion | TCGA-A8-A092 | Sequencing | Split read and paired-end mapping | 835 |
nssv3351721 | mobile element insertion | TCGA-A8-A07B | Sequencing | Split read and paired-end mapping | 1,037 |
nssv3351722 | mobile element insertion | TCGA-A8-A08L | Sequencing | Split read and paired-end mapping | 922 |
nssv3351723 | mobile element insertion | TCGA-A8-A09I | Sequencing | Split read and paired-end mapping | 1,049 |
nssv3351724 | mobile element insertion | TCGA-A8-A09X | Sequencing | Split read and paired-end mapping | 847 |
nssv3351725 | mobile element insertion | TCGA-BH-A18R | Sequencing | Split read and paired-end mapping | 1,162 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv3351692 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351693 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351694 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351695 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351696 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351697 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351698 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351699 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351700 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351701 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351702 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351703 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351704 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351705 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351706 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351707 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351708 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351709 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351710 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351711 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351712 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351713 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351714 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351715 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351716 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351717 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351718 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351719 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351720 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351721 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351722 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351723 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351724 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351725 | Remapped | Perfect | NC_000019.10:g.535 33116_53533117ins? | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 53,533,116 | 53,533,116 |
nssv3351692 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351693 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351694 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351695 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351696 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351697 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351698 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351699 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351700 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351701 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351702 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351703 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351704 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351705 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351706 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351707 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351708 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351709 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351710 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351711 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351712 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351713 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351714 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351715 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351716 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351717 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351718 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351719 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351720 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351721 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351722 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351723 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351724 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 | ||
nssv3351725 | Submitted genomic | NC_000019.9:g.5403 6370_54036371ins? | GRCh37 (hg19) | NC_000019.9 | Chr19 | 54,036,370 | 54,036,370 |