nsv993407
- Organism: Homo sapiens
- Study:nstd94 (Helman et al. 2014)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Helman et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 282 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 283 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv993407 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000021.9 | Chr21 | 39,908,226 | 39,908,226 |
| nsv993407 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000021.8 | Chr21 | 41,280,151 | 41,280,151 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3387743 | mobile element insertion | TCGA-14-1823 | Sequencing | Split read and paired-end mapping | 1,021 |
| nssv3387744 | mobile element insertion | TCGA-26-5135 | Sequencing | Split read and paired-end mapping | 1,101 |
| nssv3387745 | mobile element insertion | TCGA-CJ-4639 | Sequencing | Split read and paired-end mapping | 1,227 |
| nssv3387746 | mobile element insertion | TCGA-13-0751 | Sequencing | Split read and paired-end mapping | 764 |
| nssv3387747 | mobile element insertion | TCGA-A2-A04T | Sequencing | Split read and paired-end mapping | 895 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3387743 | Remapped | Perfect | NC_000021.9:g.3990 8226_39908227ins? | GRCh38.p12 | First Pass | NC_000021.9 | Chr21 | 39,908,226 | 39,908,226 |
| nssv3387744 | Remapped | Perfect | NC_000021.9:g.3990 8226_39908227ins? | GRCh38.p12 | First Pass | NC_000021.9 | Chr21 | 39,908,226 | 39,908,226 |
| nssv3387745 | Remapped | Perfect | NC_000021.9:g.3990 8226_39908227ins? | GRCh38.p12 | First Pass | NC_000021.9 | Chr21 | 39,908,226 | 39,908,226 |
| nssv3387746 | Remapped | Perfect | NC_000021.9:g.3990 8226_39908227ins? | GRCh38.p12 | First Pass | NC_000021.9 | Chr21 | 39,908,226 | 39,908,226 |
| nssv3387747 | Remapped | Perfect | NC_000021.9:g.3990 8226_39908227ins? | GRCh38.p12 | First Pass | NC_000021.9 | Chr21 | 39,908,226 | 39,908,226 |
| nssv3387743 | Submitted genomic | NC_000021.8:g.4128 0151_41280152ins? | GRCh37 (hg19) | NC_000021.8 | Chr21 | 41,280,151 | 41,280,151 | ||
| nssv3387744 | Submitted genomic | NC_000021.8:g.4128 0151_41280152ins? | GRCh37 (hg19) | NC_000021.8 | Chr21 | 41,280,151 | 41,280,151 | ||
| nssv3387745 | Submitted genomic | NC_000021.8:g.4128 0151_41280152ins? | GRCh37 (hg19) | NC_000021.8 | Chr21 | 41,280,151 | 41,280,151 | ||
| nssv3387746 | Submitted genomic | NC_000021.8:g.4128 0151_41280152ins? | GRCh37 (hg19) | NC_000021.8 | Chr21 | 41,280,151 | 41,280,151 | ||
| nssv3387747 | Submitted genomic | NC_000021.8:g.4128 0151_41280152ins? | GRCh37 (hg19) | NC_000021.8 | Chr21 | 41,280,151 | 41,280,151 |