nsv997006

Organisms: Gorilla beringei graueri, Gorilla gorilla diehli, Gorilla gorilla gorilla, Homo sapiens ssp. Denisova, Homo sapiens, Pan paniscus, Pan troglodytes ellioti, Pan troglodytes schweinfurthii, Pan troglodytes troglodytes, Pan troglodytes verus

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:P_pygmaeus_2.0.2 (ponAbe2)

Variant Calls:80
Validation:Not tested
Clinical Assertions: No
Region Size:2,329

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

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Select assembly:

Submitted artifact6,101,673-6,104,001

Variant Region Placement Information

Variant Region ID	Placement Type	Assembly	Assembly Unit	Sequence ID	Chr	Start	Stop
nsv997006	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Primary Assembly		Chr6_rando m	6,101,673	6,104,001

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3402892	deletion	Homo_denisova-Denisova_30x	Sequencing	Read depth	19,139
nssv3402893	deletion	SAMN01920473	Sequencing	Read depth	13,799
nssv3402894	deletion	SAMN01920474	Sequencing	Read depth	13,812
nssv3402895	deletion	SAMN01920476	Sequencing	Read depth	13,908
nssv3402896	deletion	SAMN01920492	Sequencing	Read depth	13,471
nssv3402897	deletion	SAMN01920493	Sequencing	Read depth	13,471
nssv3402898	deletion	SAMN01920494	Sequencing	Read depth	13,471
nssv3402899	deletion	SAMN01920495	Sequencing	Read depth	13,471
nssv3402900	deletion	SAMN01920496	Sequencing	Read depth	13,471
nssv3402901	deletion	SAMN01920477	Sequencing	Read depth	13,641
nssv3402902	deletion	SAMN01920479	Sequencing	Read depth	13,667
nssv3402903	deletion	SAMN01920478	Sequencing	Read depth	13,652
nssv3402904	deletion	SAMN01920480	Sequencing	Read depth	13,643
nssv3402905	deletion	Gorilla_gorilla_gorilla-9753_Kokomo	Sequencing	Read depth	13,644
nssv3402906	deletion	SAMN01920483	Sequencing	Read depth	13,645
nssv3402907	deletion	SAMN01920484	Sequencing	Read depth	13,628
nssv3402908	deletion	SAMN01920485	Sequencing	Read depth	13,644
nssv3402909	deletion	Gorilla_gorilla_gorilla-A935_Fritz	Sequencing	Read depth	13,652
nssv3402910	deletion	SAMN01920487	Sequencing	Read depth	13,625
nssv3402911	deletion	SAMN01920489	Sequencing	Read depth	13,471
nssv3402912	deletion	Gorilla_gorilla_gorilla-Snowflake	Sequencing	Read depth	13,657
nssv3402913	deletion	SAMN01920490	Sequencing	Read depth	13,471
nssv3402914	deletion	SAMN01920491	Sequencing	Read depth	13,671
nssv3402915	deletion	HGDP01307	Sequencing	Read depth	17,161
nssv3402916	deletion	HGDP00521	Sequencing	Read depth	17,171
nssv3402917	deletion	HGDP00778	Sequencing	Read depth	17,185
nssv3402918	deletion	HGDP00998	Sequencing	Read depth	17,267
nssv3402919	deletion	HGDP01284	Sequencing	Read depth	17,196
nssv3402920	deletion	HGDP00456	Sequencing	Read depth	17,189
nssv3402921	deletion	HGDP00542	Sequencing	Read depth	17,157
nssv3402922	deletion	HGDP01029	Sequencing	Read depth	17,182
nssv3402923	deletion	HGDP00665	Sequencing	Read depth	17,185
nssv3402924	deletion	HGDP00927	Sequencing	Read depth	17,185
nssv3402925	deletion	SAMN01920504	Sequencing	Read depth	14,831
nssv3402926	deletion	SAMN01920506	Sequencing	Read depth	14,796
nssv3402927	deletion	SAMN01920507	Sequencing	Read depth	14,643
nssv3402928	deletion	SAMN01920508	Sequencing	Read depth	14,784
nssv3402929	deletion	SAMN01920509	Sequencing	Read depth	14,796
nssv3402930	deletion	Pan_paniscus-A920_Kidogo	Sequencing	Read depth	14,643
nssv3402931	deletion	SAMN01920510	Sequencing	Read depth	14,643
nssv3402932	deletion	SAMN01920511	Sequencing	Read depth	14,796
nssv3402933	deletion	SAMN01920513	Sequencing	Read depth	14,803
nssv3402934	deletion	SAMN01920514	Sequencing	Read depth	14,790
nssv3402935	deletion	SAMN01920515	Sequencing	Read depth	14,814
nssv3402936	deletion	SAMN01920516	Sequencing	Read depth	14,643
nssv3402937	deletion	Pan_paniscus-A951_Pongo	Sequencing	Read depth	14,643
nssv3402938	deletion	Pan_paniscus-X00095_Kakowet	Sequencing	Read depth	14,858
nssv3402939	deletion	SAMN01920517	Sequencing	Read depth	14,560
nssv3402940	deletion	SAMN01920518	Sequencing	Read depth	14,544
nssv3402941	deletion	SAMN01920519	Sequencing	Read depth	14,560
nssv3402942	deletion	SAMN01920520	Sequencing	Read depth	14,560
nssv3402943	deletion	SAMN01920521	Sequencing	Read depth	14,554
nssv3402944	deletion	SAMN01920523	Sequencing	Read depth	14,551
nssv3402945	deletion	SAMN01920524	Sequencing	Read depth	14,557
nssv3402946	deletion	SAMN01920525	Sequencing	Read depth	14,553
nssv3402947	deletion	SAMN01920526	Sequencing	Read depth	14,541
nssv3402948	deletion	SAMN01920522	Sequencing	Read depth	14,557
nssv3402949	deletion	SAMN01920527	Sequencing	Read depth	14,562
nssv3402950	deletion	SAMN01920528	Sequencing	Read depth	14,776
nssv3402951	deletion	SAMN01920531	Sequencing	Read depth	14,608
nssv3402952	deletion	SAMN01920532	Sequencing	Read depth	14,576
nssv3402953	deletion	Pan_troglodytes_schweinfurthii-Yolanda	Sequencing	Read depth	14,664
nssv3402954	deletion	SAMN01920529	Sequencing	Read depth	14,610
nssv3402955	deletion	SAMN01920534	Sequencing	Read depth	14,815
nssv3402956	deletion	SAMN01920536	Sequencing	Read depth	15,183
nssv3402957	deletion	SAMN01920541	Sequencing	Read depth	14,615
nssv3402958	deletion	Pan_troglodytes_verus-A907_Susie_A	Sequencing	Read depth	14,602
nssv3402959	deletion	SAMN01920537	Sequencing	Read depth	14,600
nssv3402960	deletion	SAMN01920540	Sequencing	Read depth	14,584
nssv3402961	deletion	SAMN01920539	Sequencing	Read depth	14,708
nssv3402962	deletion	SAMN01920499	Sequencing	Read depth	13,641
nssv3402963	deletion	SAMN01920502	Sequencing	Read depth	13,644
nssv3402964	deletion	SAMN01920503	Sequencing	Read depth	13,626
nssv3402965	deletion	SAMN01920497	Sequencing	Read depth	13,633
nssv3402966	deletion	SAMN01920500	Sequencing	Read depth	13,643
nssv3402967	deletion	SAMN01920501	Sequencing	Read depth	13,643
nssv3402968	deletion	SAMN01920498	Sequencing	Read depth	13,636
nssv3402969	deletion	Gorilla_gorilla_gorilla-Kwan	Sequencing	Read depth	13,471
nssv3402970	deletion	Gorilla_beringei_graueri-Mukisi	Sequencing	Read depth	13,597
nssv3402971	deletion	Gorilla_gorilla_gorilla-Kamilah	Sequencing	Read depth	13,471

Variant Call Placement Information

Variant Call ID	Placement Type	Assembly	Chr	Start	Stop
nssv3402892	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402893	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402894	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402895	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402896	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402897	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402898	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402899	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402900	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402901	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402902	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402903	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402904	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402905	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402906	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402907	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402908	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402909	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402910	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402911	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402912	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402913	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402914	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402915	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402916	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402917	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402918	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402919	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402920	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402921	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402922	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402923	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402924	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402925	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402926	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402927	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402928	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402929	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402930	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402931	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402932	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402933	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402934	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402935	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402936	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402937	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402938	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402939	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402940	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402941	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402942	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402943	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402944	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402945	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402946	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402947	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402948	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402949	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402950	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402951	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402952	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402953	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402954	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402955	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402956	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402957	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402958	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402959	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402960	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402961	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402962	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402963	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402964	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402965	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402966	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402967	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402968	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402969	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402970	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001
nssv3402971	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	6,101,673	6,104,001

dbVar

Database of genomic structural variation

nsv997006

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant