nsv997008

Organisms: Gorilla beringei graueri, Gorilla gorilla diehli, Gorilla gorilla gorilla, Homo sapiens ssp. Denisova, Homo sapiens, Pan paniscus, Pan troglodytes ellioti, Pan troglodytes schweinfurthii, Pan troglodytes troglodytes, Pan troglodytes verus

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:P_pygmaeus_2.0.2 (ponAbe2)

Variant Calls:80
Validation:Not tested
Clinical Assertions: No
Region Size:6,747

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Submitted artifact8,054,142-8,060,888

Variant Region Placement Information

Variant Region ID	Placement Type	Assembly	Assembly Unit	Sequence ID	Chr	Start	Stop
nsv997008	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Primary Assembly		Chr6_rando m	8,054,142	8,060,888

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3402972	deletion	Homo_denisova-Denisova_30x	Sequencing	Read depth	19,139
nssv3402973	deletion	SAMN01920473	Sequencing	Read depth	13,799
nssv3402974	deletion	SAMN01920474	Sequencing	Read depth	13,812
nssv3402975	deletion	SAMN01920476	Sequencing	Read depth	13,908
nssv3402976	deletion	SAMN01920492	Sequencing	Read depth	13,471
nssv3402977	deletion	SAMN01920493	Sequencing	Read depth	13,471
nssv3402978	deletion	SAMN01920494	Sequencing	Read depth	13,471
nssv3402979	deletion	SAMN01920495	Sequencing	Read depth	13,471
nssv3402980	deletion	SAMN01920496	Sequencing	Read depth	13,471
nssv3402981	deletion	SAMN01920477	Sequencing	Read depth	13,641
nssv3402982	deletion	SAMN01920479	Sequencing	Read depth	13,667
nssv3402983	deletion	SAMN01920478	Sequencing	Read depth	13,652
nssv3402984	deletion	SAMN01920480	Sequencing	Read depth	13,643
nssv3402985	deletion	Gorilla_gorilla_gorilla-9753_Kokomo	Sequencing	Read depth	13,644
nssv3402986	deletion	SAMN01920483	Sequencing	Read depth	13,645
nssv3402987	deletion	SAMN01920484	Sequencing	Read depth	13,628
nssv3402988	deletion	SAMN01920485	Sequencing	Read depth	13,644
nssv3402989	deletion	Gorilla_gorilla_gorilla-A935_Fritz	Sequencing	Read depth	13,652
nssv3402990	deletion	SAMN01920487	Sequencing	Read depth	13,625
nssv3402991	deletion	SAMN01920489	Sequencing	Read depth	13,471
nssv3402992	deletion	Gorilla_gorilla_gorilla-Snowflake	Sequencing	Read depth	13,657
nssv3402993	deletion	SAMN01920490	Sequencing	Read depth	13,471
nssv3402994	deletion	SAMN01920491	Sequencing	Read depth	13,671
nssv3402995	deletion	HGDP01307	Sequencing	Read depth	17,161
nssv3402996	deletion	HGDP00521	Sequencing	Read depth	17,171
nssv3402997	deletion	HGDP00778	Sequencing	Read depth	17,185
nssv3402998	deletion	HGDP00998	Sequencing	Read depth	17,267
nssv3402999	deletion	HGDP01284	Sequencing	Read depth	17,196
nssv3403000	deletion	HGDP00456	Sequencing	Read depth	17,189
nssv3403001	deletion	HGDP00542	Sequencing	Read depth	17,157
nssv3403002	deletion	HGDP01029	Sequencing	Read depth	17,182
nssv3403003	deletion	HGDP00665	Sequencing	Read depth	17,185
nssv3403004	deletion	HGDP00927	Sequencing	Read depth	17,185
nssv3403005	deletion	SAMN01920504	Sequencing	Read depth	14,831
nssv3403006	deletion	SAMN01920506	Sequencing	Read depth	14,796
nssv3403007	deletion	SAMN01920507	Sequencing	Read depth	14,643
nssv3403008	deletion	SAMN01920508	Sequencing	Read depth	14,784
nssv3403009	deletion	SAMN01920509	Sequencing	Read depth	14,796
nssv3403010	deletion	Pan_paniscus-A920_Kidogo	Sequencing	Read depth	14,643
nssv3403011	deletion	SAMN01920510	Sequencing	Read depth	14,643
nssv3403012	deletion	SAMN01920511	Sequencing	Read depth	14,796
nssv3403013	deletion	SAMN01920513	Sequencing	Read depth	14,803
nssv3403014	deletion	SAMN01920514	Sequencing	Read depth	14,790
nssv3403015	deletion	SAMN01920515	Sequencing	Read depth	14,814
nssv3403016	deletion	SAMN01920516	Sequencing	Read depth	14,643
nssv3403017	deletion	Pan_paniscus-A951_Pongo	Sequencing	Read depth	14,643
nssv3403018	deletion	Pan_paniscus-X00095_Kakowet	Sequencing	Read depth	14,858
nssv3403019	deletion	SAMN01920517	Sequencing	Read depth	14,560
nssv3403020	deletion	SAMN01920518	Sequencing	Read depth	14,544
nssv3403021	deletion	SAMN01920519	Sequencing	Read depth	14,560
nssv3403022	deletion	SAMN01920520	Sequencing	Read depth	14,560
nssv3403023	deletion	SAMN01920521	Sequencing	Read depth	14,554
nssv3403024	deletion	SAMN01920523	Sequencing	Read depth	14,551
nssv3403025	deletion	SAMN01920524	Sequencing	Read depth	14,557
nssv3403026	deletion	SAMN01920525	Sequencing	Read depth	14,553
nssv3403027	deletion	SAMN01920526	Sequencing	Read depth	14,541
nssv3403028	deletion	SAMN01920522	Sequencing	Read depth	14,557
nssv3403029	deletion	SAMN01920527	Sequencing	Read depth	14,562
nssv3403030	deletion	SAMN01920528	Sequencing	Read depth	14,776
nssv3403031	deletion	SAMN01920531	Sequencing	Read depth	14,608
nssv3403032	deletion	SAMN01920532	Sequencing	Read depth	14,576
nssv3403033	deletion	Pan_troglodytes_schweinfurthii-Yolanda	Sequencing	Read depth	14,664
nssv3403034	deletion	SAMN01920529	Sequencing	Read depth	14,610
nssv3403035	deletion	SAMN01920534	Sequencing	Read depth	14,815
nssv3403036	deletion	SAMN01920536	Sequencing	Read depth	15,183
nssv3403037	deletion	SAMN01920541	Sequencing	Read depth	14,615
nssv3403038	deletion	Pan_troglodytes_verus-A907_Susie_A	Sequencing	Read depth	14,602
nssv3403039	deletion	SAMN01920537	Sequencing	Read depth	14,600
nssv3403040	deletion	SAMN01920540	Sequencing	Read depth	14,584
nssv3403041	deletion	SAMN01920539	Sequencing	Read depth	14,708
nssv3403042	deletion	SAMN01920499	Sequencing	Read depth	13,641
nssv3403043	deletion	SAMN01920502	Sequencing	Read depth	13,644
nssv3403044	deletion	SAMN01920503	Sequencing	Read depth	13,626
nssv3403045	deletion	SAMN01920497	Sequencing	Read depth	13,633
nssv3403046	deletion	SAMN01920500	Sequencing	Read depth	13,643
nssv3403047	deletion	SAMN01920501	Sequencing	Read depth	13,643
nssv3403048	deletion	SAMN01920498	Sequencing	Read depth	13,636
nssv3403049	deletion	Gorilla_gorilla_gorilla-Kwan	Sequencing	Read depth	13,471
nssv3403050	deletion	Gorilla_beringei_graueri-Mukisi	Sequencing	Read depth	13,597
nssv3403051	deletion	Gorilla_gorilla_gorilla-Kamilah	Sequencing	Read depth	13,471

Variant Call Placement Information

Variant Call ID	Placement Type	Assembly	Chr	Start	Stop
nssv3402972	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402973	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402974	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402975	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402976	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402977	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402978	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402979	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402980	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402981	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402982	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402983	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402984	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402985	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402986	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402987	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402988	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402989	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402990	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402991	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402992	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402993	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402994	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402995	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402996	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402997	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402998	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3402999	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403000	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403001	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403002	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403003	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403004	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403005	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403006	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403007	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403008	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403009	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403010	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403011	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403012	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403013	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403014	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403015	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403016	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403017	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403018	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403019	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403020	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403021	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403022	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403023	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403024	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403025	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403026	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403027	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403028	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403029	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403030	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403031	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403032	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403033	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403034	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403035	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403036	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403037	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403038	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403039	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403040	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403041	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403042	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403043	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403044	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403045	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403046	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403047	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403048	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403049	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403050	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888
nssv3403051	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr6_rando m	8,054,142	8,060,888

dbVar

Database of genomic structural variation

nsv997008

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant