nsv997009

Organisms: Gorilla beringei graueri, Gorilla gorilla diehli, Gorilla gorilla gorilla, Homo sapiens ssp. Denisova, Homo sapiens, Pan paniscus, Pan troglodytes ellioti, Pan troglodytes schweinfurthii, Pan troglodytes troglodytes, Pan troglodytes verus

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:P_pygmaeus_2.0.2 (ponAbe2)

Variant Calls:80
Validation:Not tested
Clinical Assertions: No
Region Size:3,551

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Submitted artifact18,745,868-18,749,418

Variant Region Placement Information

Variant Region ID	Placement Type	Assembly	Assembly Unit	Sequence ID	Chr	Start	Stop
nsv997009	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Primary Assembly		Chr1_rando m	18,745,868	18,749,418

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3436721	deletion	Homo_denisova-Denisova_30x	Sequencing	Read depth	19,139
nssv3436722	deletion	SAMN01920473	Sequencing	Read depth	13,799
nssv3436723	deletion	SAMN01920474	Sequencing	Read depth	13,812
nssv3436724	deletion	SAMN01920476	Sequencing	Read depth	13,908
nssv3436725	deletion	SAMN01920492	Sequencing	Read depth	13,471
nssv3436726	deletion	SAMN01920493	Sequencing	Read depth	13,471
nssv3436727	deletion	SAMN01920494	Sequencing	Read depth	13,471
nssv3436728	deletion	SAMN01920495	Sequencing	Read depth	13,471
nssv3436729	deletion	SAMN01920496	Sequencing	Read depth	13,471
nssv3436730	deletion	SAMN01920477	Sequencing	Read depth	13,641
nssv3436731	deletion	SAMN01920479	Sequencing	Read depth	13,667
nssv3436732	deletion	SAMN01920478	Sequencing	Read depth	13,652
nssv3436733	deletion	SAMN01920480	Sequencing	Read depth	13,643
nssv3436734	deletion	Gorilla_gorilla_gorilla-9753_Kokomo	Sequencing	Read depth	13,644
nssv3436735	deletion	SAMN01920483	Sequencing	Read depth	13,645
nssv3436736	deletion	SAMN01920484	Sequencing	Read depth	13,628
nssv3436737	deletion	SAMN01920485	Sequencing	Read depth	13,644
nssv3436738	deletion	Gorilla_gorilla_gorilla-A935_Fritz	Sequencing	Read depth	13,652
nssv3436739	deletion	SAMN01920487	Sequencing	Read depth	13,625
nssv3436740	deletion	SAMN01920489	Sequencing	Read depth	13,471
nssv3436741	deletion	Gorilla_gorilla_gorilla-Snowflake	Sequencing	Read depth	13,657
nssv3436742	deletion	SAMN01920490	Sequencing	Read depth	13,471
nssv3436743	deletion	SAMN01920491	Sequencing	Read depth	13,671
nssv3436744	deletion	HGDP01307	Sequencing	Read depth	17,161
nssv3436745	deletion	HGDP00521	Sequencing	Read depth	17,171
nssv3436746	deletion	HGDP00778	Sequencing	Read depth	17,185
nssv3436747	deletion	HGDP00998	Sequencing	Read depth	17,267
nssv3436748	deletion	HGDP01284	Sequencing	Read depth	17,196
nssv3436749	deletion	HGDP00456	Sequencing	Read depth	17,189
nssv3436750	deletion	HGDP00542	Sequencing	Read depth	17,157
nssv3436751	deletion	HGDP01029	Sequencing	Read depth	17,182
nssv3436752	deletion	HGDP00665	Sequencing	Read depth	17,185
nssv3436753	deletion	HGDP00927	Sequencing	Read depth	17,185
nssv3436754	deletion	SAMN01920504	Sequencing	Read depth	14,831
nssv3436755	deletion	SAMN01920506	Sequencing	Read depth	14,796
nssv3436756	deletion	SAMN01920507	Sequencing	Read depth	14,643
nssv3436757	deletion	SAMN01920508	Sequencing	Read depth	14,784
nssv3436758	deletion	SAMN01920509	Sequencing	Read depth	14,796
nssv3436759	deletion	Pan_paniscus-A920_Kidogo	Sequencing	Read depth	14,643
nssv3436760	deletion	SAMN01920510	Sequencing	Read depth	14,643
nssv3436761	deletion	SAMN01920511	Sequencing	Read depth	14,796
nssv3436762	deletion	SAMN01920513	Sequencing	Read depth	14,803
nssv3436763	deletion	SAMN01920514	Sequencing	Read depth	14,790
nssv3436764	deletion	SAMN01920515	Sequencing	Read depth	14,814
nssv3436765	deletion	SAMN01920516	Sequencing	Read depth	14,643
nssv3436766	deletion	Pan_paniscus-A951_Pongo	Sequencing	Read depth	14,643
nssv3436767	deletion	Pan_paniscus-X00095_Kakowet	Sequencing	Read depth	14,858
nssv3436768	deletion	SAMN01920517	Sequencing	Read depth	14,560
nssv3436769	deletion	SAMN01920518	Sequencing	Read depth	14,544
nssv3436770	deletion	SAMN01920519	Sequencing	Read depth	14,560
nssv3436771	deletion	SAMN01920520	Sequencing	Read depth	14,560
nssv3436772	deletion	SAMN01920521	Sequencing	Read depth	14,554
nssv3436773	deletion	SAMN01920523	Sequencing	Read depth	14,551
nssv3436774	deletion	SAMN01920524	Sequencing	Read depth	14,557
nssv3436775	deletion	SAMN01920525	Sequencing	Read depth	14,553
nssv3436776	deletion	SAMN01920526	Sequencing	Read depth	14,541
nssv3436777	deletion	SAMN01920522	Sequencing	Read depth	14,557
nssv3436778	deletion	SAMN01920527	Sequencing	Read depth	14,562
nssv3436779	deletion	SAMN01920528	Sequencing	Read depth	14,776
nssv3436780	deletion	SAMN01920531	Sequencing	Read depth	14,608
nssv3436781	deletion	SAMN01920532	Sequencing	Read depth	14,576
nssv3436782	deletion	Pan_troglodytes_schweinfurthii-Yolanda	Sequencing	Read depth	14,664
nssv3436783	deletion	SAMN01920529	Sequencing	Read depth	14,610
nssv3436784	deletion	SAMN01920534	Sequencing	Read depth	14,815
nssv3436785	deletion	SAMN01920536	Sequencing	Read depth	15,183
nssv3436786	deletion	SAMN01920541	Sequencing	Read depth	14,615
nssv3436787	deletion	Pan_troglodytes_verus-A907_Susie_A	Sequencing	Read depth	14,602
nssv3436788	deletion	SAMN01920537	Sequencing	Read depth	14,600
nssv3436789	deletion	SAMN01920540	Sequencing	Read depth	14,584
nssv3436790	deletion	SAMN01920539	Sequencing	Read depth	14,708
nssv3436791	deletion	SAMN01920499	Sequencing	Read depth	13,641
nssv3436792	deletion	SAMN01920502	Sequencing	Read depth	13,644
nssv3436793	deletion	SAMN01920503	Sequencing	Read depth	13,626
nssv3436794	deletion	SAMN01920497	Sequencing	Read depth	13,633
nssv3436795	deletion	SAMN01920500	Sequencing	Read depth	13,643
nssv3436796	deletion	SAMN01920501	Sequencing	Read depth	13,643
nssv3436797	deletion	SAMN01920498	Sequencing	Read depth	13,636
nssv3436798	deletion	Gorilla_gorilla_gorilla-Kwan	Sequencing	Read depth	13,471
nssv3436799	deletion	Gorilla_beringei_graueri-Mukisi	Sequencing	Read depth	13,597
nssv3436800	deletion	Gorilla_gorilla_gorilla-Kamilah	Sequencing	Read depth	13,471

Variant Call Placement Information

Variant Call ID	Placement Type	Assembly	Chr	Start	Stop
nssv3436721	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436722	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436723	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436724	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436725	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436726	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436727	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436728	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436729	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436730	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436731	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436732	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436733	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436734	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436735	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436736	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436737	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436738	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436739	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436740	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436741	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436742	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436743	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436744	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436745	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436746	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436747	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436748	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436749	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436750	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436751	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436752	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436753	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436754	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436755	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436756	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436757	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436758	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436759	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436760	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436761	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436762	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436763	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436764	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436765	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436766	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436767	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436768	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436769	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436770	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436771	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436772	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436773	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436774	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436775	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436776	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436777	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436778	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436779	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436780	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436781	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436782	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436783	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436784	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436785	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436786	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436787	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436788	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436789	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436790	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436791	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436792	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436793	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436794	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436795	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436796	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436797	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436798	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436799	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418
nssv3436800	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	18,745,868	18,749,418

dbVar

Database of genomic structural variation

nsv997009

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant