nsv997012

Organisms: Gorilla beringei graueri, Gorilla gorilla diehli, Gorilla gorilla gorilla, Homo sapiens ssp. Denisova, Homo sapiens, Pan paniscus, Pan troglodytes ellioti, Pan troglodytes schweinfurthii, Pan troglodytes troglodytes, Pan troglodytes verus

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:P_pygmaeus_2.0.2 (ponAbe2)

Variant Calls:80
Validation:Not tested
Clinical Assertions: No
Region Size:15,048

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

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Select assembly:

Submitted artifact19,098,492-19,113,539

Variant Region Placement Information

Variant Region ID	Placement Type	Assembly	Assembly Unit	Sequence ID	Chr	Start	Stop
nsv997012	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Primary Assembly		Chr1_rando m	19,098,492	19,113,539

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3436801	deletion	Homo_denisova-Denisova_30x	Sequencing	Read depth	19,139
nssv3436802	deletion	SAMN01920473	Sequencing	Read depth	13,799
nssv3436803	deletion	SAMN01920474	Sequencing	Read depth	13,812
nssv3436804	deletion	SAMN01920476	Sequencing	Read depth	13,908
nssv3436805	deletion	SAMN01920492	Sequencing	Read depth	13,471
nssv3436806	deletion	SAMN01920493	Sequencing	Read depth	13,471
nssv3436807	deletion	SAMN01920494	Sequencing	Read depth	13,471
nssv3436808	deletion	SAMN01920495	Sequencing	Read depth	13,471
nssv3436809	deletion	SAMN01920496	Sequencing	Read depth	13,471
nssv3436810	deletion	SAMN01920477	Sequencing	Read depth	13,641
nssv3436811	deletion	SAMN01920479	Sequencing	Read depth	13,667
nssv3436812	deletion	SAMN01920478	Sequencing	Read depth	13,652
nssv3436813	deletion	SAMN01920480	Sequencing	Read depth	13,643
nssv3436814	deletion	Gorilla_gorilla_gorilla-9753_Kokomo	Sequencing	Read depth	13,644
nssv3436815	deletion	SAMN01920483	Sequencing	Read depth	13,645
nssv3436816	deletion	SAMN01920484	Sequencing	Read depth	13,628
nssv3436817	deletion	SAMN01920485	Sequencing	Read depth	13,644
nssv3436818	deletion	Gorilla_gorilla_gorilla-A935_Fritz	Sequencing	Read depth	13,652
nssv3436819	deletion	SAMN01920487	Sequencing	Read depth	13,625
nssv3436820	deletion	SAMN01920489	Sequencing	Read depth	13,471
nssv3436821	deletion	Gorilla_gorilla_gorilla-Snowflake	Sequencing	Read depth	13,657
nssv3436822	deletion	SAMN01920490	Sequencing	Read depth	13,471
nssv3436823	deletion	SAMN01920491	Sequencing	Read depth	13,671
nssv3436824	deletion	HGDP01307	Sequencing	Read depth	17,161
nssv3436825	deletion	HGDP00521	Sequencing	Read depth	17,171
nssv3436826	deletion	HGDP00778	Sequencing	Read depth	17,185
nssv3436827	deletion	HGDP00998	Sequencing	Read depth	17,267
nssv3436828	deletion	HGDP01284	Sequencing	Read depth	17,196
nssv3436829	deletion	HGDP00456	Sequencing	Read depth	17,189
nssv3436830	deletion	HGDP00542	Sequencing	Read depth	17,157
nssv3436831	deletion	HGDP01029	Sequencing	Read depth	17,182
nssv3436832	deletion	HGDP00665	Sequencing	Read depth	17,185
nssv3436833	deletion	HGDP00927	Sequencing	Read depth	17,185
nssv3436834	deletion	SAMN01920504	Sequencing	Read depth	14,831
nssv3436835	deletion	SAMN01920506	Sequencing	Read depth	14,796
nssv3436836	deletion	SAMN01920507	Sequencing	Read depth	14,643
nssv3436837	deletion	SAMN01920508	Sequencing	Read depth	14,784
nssv3436838	deletion	SAMN01920509	Sequencing	Read depth	14,796
nssv3436839	deletion	Pan_paniscus-A920_Kidogo	Sequencing	Read depth	14,643
nssv3436840	deletion	SAMN01920510	Sequencing	Read depth	14,643
nssv3436841	deletion	SAMN01920511	Sequencing	Read depth	14,796
nssv3436842	deletion	SAMN01920513	Sequencing	Read depth	14,803
nssv3436843	deletion	SAMN01920514	Sequencing	Read depth	14,790
nssv3436844	deletion	SAMN01920515	Sequencing	Read depth	14,814
nssv3436845	deletion	SAMN01920516	Sequencing	Read depth	14,643
nssv3436846	deletion	Pan_paniscus-A951_Pongo	Sequencing	Read depth	14,643
nssv3436847	deletion	Pan_paniscus-X00095_Kakowet	Sequencing	Read depth	14,858
nssv3436848	deletion	SAMN01920517	Sequencing	Read depth	14,560
nssv3436849	deletion	SAMN01920518	Sequencing	Read depth	14,544
nssv3436850	deletion	SAMN01920519	Sequencing	Read depth	14,560
nssv3436851	deletion	SAMN01920520	Sequencing	Read depth	14,560
nssv3436852	deletion	SAMN01920521	Sequencing	Read depth	14,554
nssv3436853	deletion	SAMN01920523	Sequencing	Read depth	14,551
nssv3436854	deletion	SAMN01920524	Sequencing	Read depth	14,557
nssv3436855	deletion	SAMN01920525	Sequencing	Read depth	14,553
nssv3436856	deletion	SAMN01920526	Sequencing	Read depth	14,541
nssv3436857	deletion	SAMN01920522	Sequencing	Read depth	14,557
nssv3436858	deletion	SAMN01920527	Sequencing	Read depth	14,562
nssv3436859	deletion	SAMN01920528	Sequencing	Read depth	14,776
nssv3436860	deletion	SAMN01920531	Sequencing	Read depth	14,608
nssv3436861	deletion	SAMN01920532	Sequencing	Read depth	14,576
nssv3436862	deletion	Pan_troglodytes_schweinfurthii-Yolanda	Sequencing	Read depth	14,664
nssv3436863	deletion	SAMN01920529	Sequencing	Read depth	14,610
nssv3436864	deletion	SAMN01920534	Sequencing	Read depth	14,815
nssv3436865	deletion	SAMN01920536	Sequencing	Read depth	15,183
nssv3436866	deletion	SAMN01920541	Sequencing	Read depth	14,615
nssv3436867	deletion	Pan_troglodytes_verus-A907_Susie_A	Sequencing	Read depth	14,602
nssv3436868	deletion	SAMN01920537	Sequencing	Read depth	14,600
nssv3436869	deletion	SAMN01920540	Sequencing	Read depth	14,584
nssv3436870	deletion	SAMN01920539	Sequencing	Read depth	14,708
nssv3436871	deletion	SAMN01920499	Sequencing	Read depth	13,641
nssv3436872	deletion	SAMN01920502	Sequencing	Read depth	13,644
nssv3436873	deletion	SAMN01920503	Sequencing	Read depth	13,626
nssv3436874	deletion	SAMN01920497	Sequencing	Read depth	13,633
nssv3436875	deletion	SAMN01920500	Sequencing	Read depth	13,643
nssv3436876	deletion	SAMN01920501	Sequencing	Read depth	13,643
nssv3436877	deletion	SAMN01920498	Sequencing	Read depth	13,636
nssv3436878	deletion	Gorilla_gorilla_gorilla-Kwan	Sequencing	Read depth	13,471
nssv3436879	deletion	Gorilla_beringei_graueri-Mukisi	Sequencing	Read depth	13,597
nssv3436880	deletion	Gorilla_gorilla_gorilla-Kamilah	Sequencing	Read depth	13,471

Variant Call Placement Information

Variant Call ID	Placement Type	Assembly	Chr	Start	Stop
nssv3436801	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436802	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436803	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436804	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436805	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436806	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436807	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436808	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436809	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436810	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436811	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436812	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436813	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436814	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436815	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436816	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436817	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436818	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436819	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436820	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436821	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436822	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436823	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436824	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436825	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436826	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436827	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436828	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436829	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436830	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436831	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436832	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436833	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436834	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436835	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436836	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436837	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436838	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436839	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436840	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436841	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436842	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436843	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436844	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436845	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436846	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436847	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436848	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436849	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436850	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436851	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436852	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436853	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436854	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436855	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436856	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436857	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436858	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436859	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436860	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436861	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436862	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436863	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436864	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436865	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436866	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436867	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436868	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436869	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436870	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436871	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436872	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436873	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436874	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436875	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436876	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436877	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436878	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436879	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539
nssv3436880	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,098,492	19,113,539

dbVar

Database of genomic structural variation

nsv997012

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant