nsv997014
- Study:nstd82 (Sudmant et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:P_pygmaeus_2.0.2 (ponAbe2)
- Variant Calls:80
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,649
- Publication(s):Sudmant et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Variant Region Placement Information
| Variant Region ID | Placement Type | Assembly | Assembly Unit | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|
| nsv997014 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Primary Assembly | Chr1_rando m | 19,163,246 | 19,164,894 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3436881 | deletion | Homo_denisova-Denisova_30x | Sequencing | Read depth | 19,139 |
| nssv3436882 | deletion | SAMN01920473 | Sequencing | Read depth | 13,799 |
| nssv3436883 | deletion | SAMN01920474 | Sequencing | Read depth | 13,812 |
| nssv3436884 | deletion | SAMN01920476 | Sequencing | Read depth | 13,908 |
| nssv3436885 | deletion | SAMN01920492 | Sequencing | Read depth | 13,471 |
| nssv3436886 | deletion | SAMN01920493 | Sequencing | Read depth | 13,471 |
| nssv3436887 | deletion | SAMN01920494 | Sequencing | Read depth | 13,471 |
| nssv3436888 | deletion | SAMN01920495 | Sequencing | Read depth | 13,471 |
| nssv3436889 | deletion | SAMN01920496 | Sequencing | Read depth | 13,471 |
| nssv3436890 | deletion | SAMN01920477 | Sequencing | Read depth | 13,641 |
| nssv3436891 | deletion | SAMN01920479 | Sequencing | Read depth | 13,667 |
| nssv3436892 | deletion | SAMN01920478 | Sequencing | Read depth | 13,652 |
| nssv3436893 | deletion | SAMN01920480 | Sequencing | Read depth | 13,643 |
| nssv3436894 | deletion | Gorilla_gorilla_gorilla-9753_Kokomo | Sequencing | Read depth | 13,644 |
| nssv3436895 | deletion | SAMN01920483 | Sequencing | Read depth | 13,645 |
| nssv3436896 | deletion | SAMN01920484 | Sequencing | Read depth | 13,628 |
| nssv3436897 | deletion | SAMN01920485 | Sequencing | Read depth | 13,644 |
| nssv3436898 | deletion | Gorilla_gorilla_gorilla-A935_Fritz | Sequencing | Read depth | 13,652 |
| nssv3436899 | deletion | SAMN01920487 | Sequencing | Read depth | 13,625 |
| nssv3436900 | deletion | SAMN01920489 | Sequencing | Read depth | 13,471 |
| nssv3436901 | deletion | Gorilla_gorilla_gorilla-Snowflake | Sequencing | Read depth | 13,657 |
| nssv3436902 | deletion | SAMN01920490 | Sequencing | Read depth | 13,471 |
| nssv3436903 | deletion | SAMN01920491 | Sequencing | Read depth | 13,671 |
| nssv3436904 | deletion | HGDP01307 | Sequencing | Read depth | 17,161 |
| nssv3436905 | deletion | HGDP00521 | Sequencing | Read depth | 17,171 |
| nssv3436906 | deletion | HGDP00778 | Sequencing | Read depth | 17,185 |
| nssv3436907 | deletion | HGDP00998 | Sequencing | Read depth | 17,267 |
| nssv3436908 | deletion | HGDP01284 | Sequencing | Read depth | 17,196 |
| nssv3436909 | deletion | HGDP00456 | Sequencing | Read depth | 17,189 |
| nssv3436910 | deletion | HGDP00542 | Sequencing | Read depth | 17,157 |
| nssv3436911 | deletion | HGDP01029 | Sequencing | Read depth | 17,182 |
| nssv3436912 | deletion | HGDP00665 | Sequencing | Read depth | 17,185 |
| nssv3436913 | deletion | HGDP00927 | Sequencing | Read depth | 17,185 |
| nssv3436914 | deletion | SAMN01920504 | Sequencing | Read depth | 14,831 |
| nssv3436915 | deletion | SAMN01920506 | Sequencing | Read depth | 14,796 |
| nssv3436916 | deletion | SAMN01920507 | Sequencing | Read depth | 14,643 |
| nssv3436917 | deletion | SAMN01920508 | Sequencing | Read depth | 14,784 |
| nssv3436918 | deletion | SAMN01920509 | Sequencing | Read depth | 14,796 |
| nssv3436919 | deletion | Pan_paniscus-A920_Kidogo | Sequencing | Read depth | 14,643 |
| nssv3436920 | deletion | SAMN01920510 | Sequencing | Read depth | 14,643 |
| nssv3436921 | deletion | SAMN01920511 | Sequencing | Read depth | 14,796 |
| nssv3436922 | deletion | SAMN01920513 | Sequencing | Read depth | 14,803 |
| nssv3436923 | deletion | SAMN01920514 | Sequencing | Read depth | 14,790 |
| nssv3436924 | deletion | SAMN01920515 | Sequencing | Read depth | 14,814 |
| nssv3436925 | deletion | SAMN01920516 | Sequencing | Read depth | 14,643 |
| nssv3436926 | deletion | Pan_paniscus-A951_Pongo | Sequencing | Read depth | 14,643 |
| nssv3436927 | deletion | Pan_paniscus-X00095_Kakowet | Sequencing | Read depth | 14,858 |
| nssv3436928 | deletion | SAMN01920517 | Sequencing | Read depth | 14,560 |
| nssv3436929 | deletion | SAMN01920518 | Sequencing | Read depth | 14,544 |
| nssv3436930 | deletion | SAMN01920519 | Sequencing | Read depth | 14,560 |
| nssv3436931 | deletion | SAMN01920520 | Sequencing | Read depth | 14,560 |
| nssv3436932 | deletion | SAMN01920521 | Sequencing | Read depth | 14,554 |
| nssv3436933 | deletion | SAMN01920523 | Sequencing | Read depth | 14,551 |
| nssv3436934 | deletion | SAMN01920524 | Sequencing | Read depth | 14,557 |
| nssv3436935 | deletion | SAMN01920525 | Sequencing | Read depth | 14,553 |
| nssv3436936 | deletion | SAMN01920526 | Sequencing | Read depth | 14,541 |
| nssv3436937 | deletion | SAMN01920522 | Sequencing | Read depth | 14,557 |
| nssv3436938 | deletion | SAMN01920527 | Sequencing | Read depth | 14,562 |
| nssv3436939 | deletion | SAMN01920528 | Sequencing | Read depth | 14,776 |
| nssv3436940 | deletion | SAMN01920531 | Sequencing | Read depth | 14,608 |
| nssv3436941 | deletion | SAMN01920532 | Sequencing | Read depth | 14,576 |
| nssv3436942 | deletion | Pan_troglodytes_schweinfurthii-Yolanda | Sequencing | Read depth | 14,664 |
| nssv3436943 | deletion | SAMN01920529 | Sequencing | Read depth | 14,610 |
| nssv3436944 | deletion | SAMN01920534 | Sequencing | Read depth | 14,815 |
| nssv3436945 | deletion | SAMN01920536 | Sequencing | Read depth | 15,183 |
| nssv3436946 | deletion | SAMN01920541 | Sequencing | Read depth | 14,615 |
| nssv3436947 | deletion | Pan_troglodytes_verus-A907_Susie_A | Sequencing | Read depth | 14,602 |
| nssv3436948 | deletion | SAMN01920537 | Sequencing | Read depth | 14,600 |
| nssv3436949 | deletion | SAMN01920540 | Sequencing | Read depth | 14,584 |
| nssv3436950 | deletion | SAMN01920539 | Sequencing | Read depth | 14,708 |
| nssv3436951 | deletion | SAMN01920499 | Sequencing | Read depth | 13,641 |
| nssv3436952 | deletion | SAMN01920502 | Sequencing | Read depth | 13,644 |
| nssv3436953 | deletion | SAMN01920503 | Sequencing | Read depth | 13,626 |
| nssv3436954 | deletion | SAMN01920497 | Sequencing | Read depth | 13,633 |
| nssv3436955 | deletion | SAMN01920500 | Sequencing | Read depth | 13,643 |
| nssv3436956 | deletion | SAMN01920501 | Sequencing | Read depth | 13,643 |
| nssv3436957 | deletion | SAMN01920498 | Sequencing | Read depth | 13,636 |
| nssv3436958 | deletion | Gorilla_gorilla_gorilla-Kwan | Sequencing | Read depth | 13,471 |
| nssv3436959 | deletion | Gorilla_beringei_graueri-Mukisi | Sequencing | Read depth | 13,597 |
| nssv3436960 | deletion | Gorilla_gorilla_gorilla-Kamilah | Sequencing | Read depth | 13,471 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Assembly | Chr | Start | Stop |
|---|---|---|---|---|---|
| nssv3436881 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436882 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436883 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436884 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436885 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436886 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436887 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436888 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436889 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436890 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436891 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436892 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436893 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436894 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436895 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436896 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436897 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436898 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436899 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436900 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436901 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436902 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436903 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436904 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436905 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436906 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436907 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436908 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436909 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436910 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436911 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436912 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436913 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436914 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436915 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436916 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436917 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436918 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436919 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436920 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436921 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436922 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436923 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436924 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436925 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436926 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436927 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436928 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436929 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436930 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436931 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436932 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436933 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436934 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436935 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436936 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436937 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436938 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436939 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436940 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436941 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436942 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436943 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436944 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436945 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436946 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436947 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436948 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436949 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436950 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436951 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436952 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436953 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436954 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436955 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436956 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436957 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436958 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436959 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |
| nssv3436960 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr1_rando m | 19,163,246 | 19,164,894 |