nsv997020

Organisms: Gorilla beringei graueri, Gorilla gorilla diehli, Gorilla gorilla gorilla, Homo sapiens ssp. Denisova, Homo sapiens, Pan paniscus, Pan troglodytes ellioti, Pan troglodytes schweinfurthii, Pan troglodytes troglodytes, Pan troglodytes verus

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:P_pygmaeus_2.0.2 (ponAbe2)

Variant Calls:80
Validation:Not tested
Clinical Assertions: No
Region Size:2,298

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

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Select assembly:

Submitted artifact19,670,476-19,672,773

Variant Region Placement Information

Variant Region ID	Placement Type	Assembly	Assembly Unit	Sequence ID	Chr	Start	Stop
nsv997020	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Primary Assembly		Chr1_rando m	19,670,476	19,672,773

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3437020	deletion	Homo_denisova-Denisova_30x	Sequencing	Read depth	19,139
nssv3437021	deletion	SAMN01920473	Sequencing	Read depth	13,799
nssv3437022	deletion	SAMN01920474	Sequencing	Read depth	13,812
nssv3437023	deletion	SAMN01920476	Sequencing	Read depth	13,908
nssv3437024	deletion	SAMN01920492	Sequencing	Read depth	13,471
nssv3437025	deletion	SAMN01920493	Sequencing	Read depth	13,471
nssv3437026	deletion	SAMN01920494	Sequencing	Read depth	13,471
nssv3437027	deletion	SAMN01920495	Sequencing	Read depth	13,471
nssv3437028	deletion	SAMN01920496	Sequencing	Read depth	13,471
nssv3437029	deletion	SAMN01920477	Sequencing	Read depth	13,641
nssv3437030	deletion	SAMN01920479	Sequencing	Read depth	13,667
nssv3437031	deletion	SAMN01920478	Sequencing	Read depth	13,652
nssv3437032	deletion	SAMN01920480	Sequencing	Read depth	13,643
nssv3437033	deletion	Gorilla_gorilla_gorilla-9753_Kokomo	Sequencing	Read depth	13,644
nssv3437034	deletion	SAMN01920483	Sequencing	Read depth	13,645
nssv3437035	deletion	SAMN01920484	Sequencing	Read depth	13,628
nssv3437036	deletion	SAMN01920485	Sequencing	Read depth	13,644
nssv3437037	deletion	Gorilla_gorilla_gorilla-A935_Fritz	Sequencing	Read depth	13,652
nssv3437038	deletion	SAMN01920487	Sequencing	Read depth	13,625
nssv3437039	deletion	SAMN01920489	Sequencing	Read depth	13,471
nssv3437040	deletion	Gorilla_gorilla_gorilla-Snowflake	Sequencing	Read depth	13,657
nssv3437041	deletion	SAMN01920490	Sequencing	Read depth	13,471
nssv3437042	deletion	SAMN01920491	Sequencing	Read depth	13,671
nssv3437043	deletion	HGDP01307	Sequencing	Read depth	17,161
nssv3437044	deletion	HGDP00521	Sequencing	Read depth	17,171
nssv3437045	deletion	HGDP00778	Sequencing	Read depth	17,185
nssv3437046	deletion	HGDP00998	Sequencing	Read depth	17,267
nssv3437047	deletion	HGDP01284	Sequencing	Read depth	17,196
nssv3437048	deletion	HGDP00456	Sequencing	Read depth	17,189
nssv3437049	deletion	HGDP00542	Sequencing	Read depth	17,157
nssv3437050	deletion	HGDP01029	Sequencing	Read depth	17,182
nssv3437051	deletion	HGDP00665	Sequencing	Read depth	17,185
nssv3437052	deletion	HGDP00927	Sequencing	Read depth	17,185
nssv3437053	deletion	SAMN01920504	Sequencing	Read depth	14,831
nssv3437054	deletion	SAMN01920506	Sequencing	Read depth	14,796
nssv3437055	deletion	SAMN01920507	Sequencing	Read depth	14,643
nssv3437056	deletion	SAMN01920508	Sequencing	Read depth	14,784
nssv3437057	deletion	SAMN01920509	Sequencing	Read depth	14,796
nssv3437058	deletion	Pan_paniscus-A920_Kidogo	Sequencing	Read depth	14,643
nssv3437059	deletion	SAMN01920510	Sequencing	Read depth	14,643
nssv3437060	deletion	SAMN01920511	Sequencing	Read depth	14,796
nssv3437061	deletion	SAMN01920513	Sequencing	Read depth	14,803
nssv3437062	deletion	SAMN01920514	Sequencing	Read depth	14,790
nssv3437063	deletion	SAMN01920515	Sequencing	Read depth	14,814
nssv3437064	deletion	SAMN01920516	Sequencing	Read depth	14,643
nssv3437065	deletion	Pan_paniscus-A951_Pongo	Sequencing	Read depth	14,643
nssv3437066	deletion	Pan_paniscus-X00095_Kakowet	Sequencing	Read depth	14,858
nssv3437067	deletion	SAMN01920517	Sequencing	Read depth	14,560
nssv3437068	deletion	SAMN01920518	Sequencing	Read depth	14,544
nssv3437069	deletion	SAMN01920519	Sequencing	Read depth	14,560
nssv3437070	deletion	SAMN01920520	Sequencing	Read depth	14,560
nssv3437071	deletion	SAMN01920521	Sequencing	Read depth	14,554
nssv3437072	deletion	SAMN01920523	Sequencing	Read depth	14,551
nssv3437073	deletion	SAMN01920524	Sequencing	Read depth	14,557
nssv3437074	deletion	SAMN01920525	Sequencing	Read depth	14,553
nssv3437075	deletion	SAMN01920526	Sequencing	Read depth	14,541
nssv3437076	deletion	SAMN01920522	Sequencing	Read depth	14,557
nssv3437077	deletion	SAMN01920527	Sequencing	Read depth	14,562
nssv3437078	deletion	SAMN01920528	Sequencing	Read depth	14,776
nssv3437079	deletion	SAMN01920531	Sequencing	Read depth	14,608
nssv3437080	deletion	SAMN01920532	Sequencing	Read depth	14,576
nssv3437081	deletion	Pan_troglodytes_schweinfurthii-Yolanda	Sequencing	Read depth	14,664
nssv3437082	deletion	SAMN01920529	Sequencing	Read depth	14,610
nssv3437083	deletion	SAMN01920534	Sequencing	Read depth	14,815
nssv3437084	deletion	SAMN01920536	Sequencing	Read depth	15,183
nssv3437085	deletion	SAMN01920541	Sequencing	Read depth	14,615
nssv3437086	deletion	Pan_troglodytes_verus-A907_Susie_A	Sequencing	Read depth	14,602
nssv3437087	deletion	SAMN01920537	Sequencing	Read depth	14,600
nssv3437088	deletion	SAMN01920540	Sequencing	Read depth	14,584
nssv3437089	deletion	SAMN01920539	Sequencing	Read depth	14,708
nssv3437090	deletion	SAMN01920499	Sequencing	Read depth	13,641
nssv3437091	deletion	SAMN01920502	Sequencing	Read depth	13,644
nssv3437092	deletion	SAMN01920503	Sequencing	Read depth	13,626
nssv3437093	deletion	SAMN01920497	Sequencing	Read depth	13,633
nssv3437094	deletion	SAMN01920500	Sequencing	Read depth	13,643
nssv3437095	deletion	SAMN01920501	Sequencing	Read depth	13,643
nssv3437096	deletion	SAMN01920498	Sequencing	Read depth	13,636
nssv3437097	deletion	Gorilla_gorilla_gorilla-Kwan	Sequencing	Read depth	13,471
nssv3437098	deletion	Gorilla_beringei_graueri-Mukisi	Sequencing	Read depth	13,597
nssv3437099	deletion	Gorilla_gorilla_gorilla-Kamilah	Sequencing	Read depth	13,471

Variant Call Placement Information

Variant Call ID	Placement Type	Assembly	Chr	Start	Stop
nssv3437020	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437021	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437022	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437023	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437024	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437025	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437026	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437027	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437028	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437029	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437030	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437031	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437032	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437033	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437034	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437035	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437036	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437037	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437038	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437039	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437040	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437041	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437042	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437043	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437044	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437045	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437046	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437047	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437048	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437049	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437050	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437051	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437052	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437053	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437054	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437055	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437056	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437057	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437058	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437059	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437060	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437061	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437062	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437063	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437064	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437065	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437066	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437067	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437068	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437069	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437070	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437071	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437072	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437073	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437074	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437075	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437076	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437077	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437078	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437079	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437080	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437081	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437082	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437083	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437084	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437085	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437086	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437087	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437088	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437089	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437090	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437091	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437092	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437093	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437094	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437095	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437096	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437097	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437098	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773
nssv3437099	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,670,476	19,672,773

dbVar

Database of genomic structural variation

nsv997020

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant