nsv997023

Organisms: Gorilla beringei graueri, Gorilla gorilla diehli, Gorilla gorilla gorilla, Homo sapiens ssp. Denisova, Homo sapiens, Pan paniscus, Pan troglodytes ellioti, Pan troglodytes schweinfurthii, Pan troglodytes troglodytes, Pan troglodytes verus

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:P_pygmaeus_2.0.2 (ponAbe2)

Variant Calls:80
Validation:Not tested
Clinical Assertions: No
Region Size:1,812

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Submitted artifact19,835,203-19,837,014

Variant Region Placement Information

Variant Region ID	Placement Type	Assembly	Assembly Unit	Sequence ID	Chr	Start	Stop
nsv997023	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Primary Assembly		Chr1_rando m	19,835,203	19,837,014

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3437100	deletion	Homo_denisova-Denisova_30x	Sequencing	Read depth	19,139
nssv3437101	deletion	SAMN01920473	Sequencing	Read depth	13,799
nssv3437102	deletion	SAMN01920474	Sequencing	Read depth	13,812
nssv3437103	deletion	SAMN01920476	Sequencing	Read depth	13,908
nssv3437104	deletion	SAMN01920492	Sequencing	Read depth	13,471
nssv3437105	deletion	SAMN01920493	Sequencing	Read depth	13,471
nssv3437106	deletion	SAMN01920494	Sequencing	Read depth	13,471
nssv3437107	deletion	SAMN01920495	Sequencing	Read depth	13,471
nssv3437108	deletion	SAMN01920496	Sequencing	Read depth	13,471
nssv3437109	deletion	SAMN01920477	Sequencing	Read depth	13,641
nssv3437110	deletion	SAMN01920479	Sequencing	Read depth	13,667
nssv3437111	deletion	SAMN01920478	Sequencing	Read depth	13,652
nssv3437112	deletion	SAMN01920480	Sequencing	Read depth	13,643
nssv3437113	deletion	Gorilla_gorilla_gorilla-9753_Kokomo	Sequencing	Read depth	13,644
nssv3437114	deletion	SAMN01920483	Sequencing	Read depth	13,645
nssv3437115	deletion	SAMN01920484	Sequencing	Read depth	13,628
nssv3437116	deletion	SAMN01920485	Sequencing	Read depth	13,644
nssv3437117	deletion	Gorilla_gorilla_gorilla-A935_Fritz	Sequencing	Read depth	13,652
nssv3437118	deletion	SAMN01920487	Sequencing	Read depth	13,625
nssv3437119	deletion	SAMN01920489	Sequencing	Read depth	13,471
nssv3437120	deletion	Gorilla_gorilla_gorilla-Snowflake	Sequencing	Read depth	13,657
nssv3437121	deletion	SAMN01920490	Sequencing	Read depth	13,471
nssv3437122	deletion	SAMN01920491	Sequencing	Read depth	13,671
nssv3437123	deletion	HGDP01307	Sequencing	Read depth	17,161
nssv3437124	deletion	HGDP00521	Sequencing	Read depth	17,171
nssv3437125	deletion	HGDP00778	Sequencing	Read depth	17,185
nssv3437126	deletion	HGDP00998	Sequencing	Read depth	17,267
nssv3437127	deletion	HGDP01284	Sequencing	Read depth	17,196
nssv3437128	deletion	HGDP00456	Sequencing	Read depth	17,189
nssv3437129	deletion	HGDP00542	Sequencing	Read depth	17,157
nssv3437130	deletion	HGDP01029	Sequencing	Read depth	17,182
nssv3437131	deletion	HGDP00665	Sequencing	Read depth	17,185
nssv3437132	deletion	HGDP00927	Sequencing	Read depth	17,185
nssv3437133	deletion	SAMN01920504	Sequencing	Read depth	14,831
nssv3437134	deletion	SAMN01920506	Sequencing	Read depth	14,796
nssv3437135	deletion	SAMN01920507	Sequencing	Read depth	14,643
nssv3437136	deletion	SAMN01920508	Sequencing	Read depth	14,784
nssv3437137	deletion	SAMN01920509	Sequencing	Read depth	14,796
nssv3437138	deletion	Pan_paniscus-A920_Kidogo	Sequencing	Read depth	14,643
nssv3437139	deletion	SAMN01920510	Sequencing	Read depth	14,643
nssv3437140	deletion	SAMN01920511	Sequencing	Read depth	14,796
nssv3437141	deletion	SAMN01920513	Sequencing	Read depth	14,803
nssv3437142	deletion	SAMN01920514	Sequencing	Read depth	14,790
nssv3437143	deletion	SAMN01920515	Sequencing	Read depth	14,814
nssv3437144	deletion	SAMN01920516	Sequencing	Read depth	14,643
nssv3437145	deletion	Pan_paniscus-A951_Pongo	Sequencing	Read depth	14,643
nssv3437146	deletion	Pan_paniscus-X00095_Kakowet	Sequencing	Read depth	14,858
nssv3437147	deletion	SAMN01920517	Sequencing	Read depth	14,560
nssv3437148	deletion	SAMN01920518	Sequencing	Read depth	14,544
nssv3437149	deletion	SAMN01920519	Sequencing	Read depth	14,560
nssv3437150	deletion	SAMN01920520	Sequencing	Read depth	14,560
nssv3437151	deletion	SAMN01920521	Sequencing	Read depth	14,554
nssv3437152	deletion	SAMN01920523	Sequencing	Read depth	14,551
nssv3437153	deletion	SAMN01920524	Sequencing	Read depth	14,557
nssv3437154	deletion	SAMN01920525	Sequencing	Read depth	14,553
nssv3437155	deletion	SAMN01920526	Sequencing	Read depth	14,541
nssv3437156	deletion	SAMN01920522	Sequencing	Read depth	14,557
nssv3437157	deletion	SAMN01920527	Sequencing	Read depth	14,562
nssv3437158	deletion	SAMN01920528	Sequencing	Read depth	14,776
nssv3437159	deletion	SAMN01920531	Sequencing	Read depth	14,608
nssv3437160	deletion	SAMN01920532	Sequencing	Read depth	14,576
nssv3437161	deletion	Pan_troglodytes_schweinfurthii-Yolanda	Sequencing	Read depth	14,664
nssv3437162	deletion	SAMN01920529	Sequencing	Read depth	14,610
nssv3437163	deletion	SAMN01920534	Sequencing	Read depth	14,815
nssv3437164	deletion	SAMN01920536	Sequencing	Read depth	15,183
nssv3437165	deletion	SAMN01920541	Sequencing	Read depth	14,615
nssv3437166	deletion	Pan_troglodytes_verus-A907_Susie_A	Sequencing	Read depth	14,602
nssv3437167	deletion	SAMN01920537	Sequencing	Read depth	14,600
nssv3437168	deletion	SAMN01920540	Sequencing	Read depth	14,584
nssv3437169	deletion	SAMN01920539	Sequencing	Read depth	14,708
nssv3437170	deletion	SAMN01920499	Sequencing	Read depth	13,641
nssv3437171	deletion	SAMN01920502	Sequencing	Read depth	13,644
nssv3437172	deletion	SAMN01920503	Sequencing	Read depth	13,626
nssv3437173	deletion	SAMN01920497	Sequencing	Read depth	13,633
nssv3437174	deletion	SAMN01920500	Sequencing	Read depth	13,643
nssv3437175	deletion	SAMN01920501	Sequencing	Read depth	13,643
nssv3437176	deletion	SAMN01920498	Sequencing	Read depth	13,636
nssv3437177	deletion	Gorilla_gorilla_gorilla-Kwan	Sequencing	Read depth	13,471
nssv3437178	deletion	Gorilla_beringei_graueri-Mukisi	Sequencing	Read depth	13,597
nssv3437179	deletion	Gorilla_gorilla_gorilla-Kamilah	Sequencing	Read depth	13,471

Variant Call Placement Information

Variant Call ID	Placement Type	Assembly	Chr	Start	Stop
nssv3437100	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437101	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437102	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437103	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437104	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437105	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437106	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437107	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437108	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437109	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437110	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437111	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437112	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437113	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437114	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437115	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437116	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437117	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437118	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437119	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437120	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437121	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437122	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437123	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437124	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437125	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437126	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437127	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437128	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437129	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437130	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437131	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437132	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437133	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437134	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437135	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437136	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437137	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437138	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437139	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437140	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437141	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437142	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437143	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437144	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437145	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437146	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437147	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437148	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437149	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437150	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437151	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437152	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437153	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437154	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437155	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437156	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437157	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437158	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437159	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437160	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437161	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437162	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437163	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437164	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437165	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437166	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437167	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437168	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437169	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437170	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437171	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437172	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437173	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437174	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437175	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437176	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437177	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437178	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014
nssv3437179	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	19,835,203	19,837,014

dbVar

Database of genomic structural variation

nsv997023

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant