nsv997024
- Study:nstd82 (Sudmant et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:P_pygmaeus_2.0.2 (ponAbe2)
- Variant Calls:80
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,362
- Publication(s):Sudmant et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Variant Region Placement Information
| Variant Region ID | Placement Type | Assembly | Assembly Unit | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|
| nsv997024 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Primary Assembly | Chr7_rando m | 4,107,880 | 4,109,241 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3403453 | deletion | Homo_denisova-Denisova_30x | Sequencing | Read depth | 19,139 |
| nssv3403454 | deletion | SAMN01920473 | Sequencing | Read depth | 13,799 |
| nssv3403455 | deletion | SAMN01920474 | Sequencing | Read depth | 13,812 |
| nssv3403456 | deletion | SAMN01920476 | Sequencing | Read depth | 13,908 |
| nssv3403457 | deletion | SAMN01920492 | Sequencing | Read depth | 13,471 |
| nssv3403458 | deletion | SAMN01920493 | Sequencing | Read depth | 13,471 |
| nssv3403459 | deletion | SAMN01920494 | Sequencing | Read depth | 13,471 |
| nssv3403460 | deletion | SAMN01920495 | Sequencing | Read depth | 13,471 |
| nssv3403461 | deletion | SAMN01920496 | Sequencing | Read depth | 13,471 |
| nssv3403462 | deletion | SAMN01920477 | Sequencing | Read depth | 13,641 |
| nssv3403463 | deletion | SAMN01920479 | Sequencing | Read depth | 13,667 |
| nssv3403464 | deletion | SAMN01920478 | Sequencing | Read depth | 13,652 |
| nssv3403465 | deletion | SAMN01920480 | Sequencing | Read depth | 13,643 |
| nssv3403466 | deletion | Gorilla_gorilla_gorilla-9753_Kokomo | Sequencing | Read depth | 13,644 |
| nssv3403467 | deletion | SAMN01920483 | Sequencing | Read depth | 13,645 |
| nssv3403468 | deletion | SAMN01920484 | Sequencing | Read depth | 13,628 |
| nssv3403469 | deletion | SAMN01920485 | Sequencing | Read depth | 13,644 |
| nssv3403470 | deletion | Gorilla_gorilla_gorilla-A935_Fritz | Sequencing | Read depth | 13,652 |
| nssv3403471 | deletion | SAMN01920487 | Sequencing | Read depth | 13,625 |
| nssv3403472 | deletion | SAMN01920489 | Sequencing | Read depth | 13,471 |
| nssv3403473 | deletion | Gorilla_gorilla_gorilla-Snowflake | Sequencing | Read depth | 13,657 |
| nssv3403474 | deletion | SAMN01920490 | Sequencing | Read depth | 13,471 |
| nssv3403475 | deletion | SAMN01920491 | Sequencing | Read depth | 13,671 |
| nssv3403476 | deletion | HGDP01307 | Sequencing | Read depth | 17,161 |
| nssv3403477 | deletion | HGDP00521 | Sequencing | Read depth | 17,171 |
| nssv3403478 | deletion | HGDP00778 | Sequencing | Read depth | 17,185 |
| nssv3403479 | deletion | HGDP00998 | Sequencing | Read depth | 17,267 |
| nssv3403480 | deletion | HGDP01284 | Sequencing | Read depth | 17,196 |
| nssv3403481 | deletion | HGDP00456 | Sequencing | Read depth | 17,189 |
| nssv3403482 | deletion | HGDP00542 | Sequencing | Read depth | 17,157 |
| nssv3403483 | deletion | HGDP01029 | Sequencing | Read depth | 17,182 |
| nssv3403484 | deletion | HGDP00665 | Sequencing | Read depth | 17,185 |
| nssv3403485 | deletion | HGDP00927 | Sequencing | Read depth | 17,185 |
| nssv3403486 | deletion | SAMN01920504 | Sequencing | Read depth | 14,831 |
| nssv3403487 | deletion | SAMN01920506 | Sequencing | Read depth | 14,796 |
| nssv3403488 | deletion | SAMN01920507 | Sequencing | Read depth | 14,643 |
| nssv3403489 | deletion | SAMN01920508 | Sequencing | Read depth | 14,784 |
| nssv3403490 | deletion | SAMN01920509 | Sequencing | Read depth | 14,796 |
| nssv3403491 | deletion | Pan_paniscus-A920_Kidogo | Sequencing | Read depth | 14,643 |
| nssv3403492 | deletion | SAMN01920510 | Sequencing | Read depth | 14,643 |
| nssv3403493 | deletion | SAMN01920511 | Sequencing | Read depth | 14,796 |
| nssv3403494 | deletion | SAMN01920513 | Sequencing | Read depth | 14,803 |
| nssv3403495 | deletion | SAMN01920514 | Sequencing | Read depth | 14,790 |
| nssv3403496 | deletion | SAMN01920515 | Sequencing | Read depth | 14,814 |
| nssv3403497 | deletion | SAMN01920516 | Sequencing | Read depth | 14,643 |
| nssv3403498 | deletion | Pan_paniscus-A951_Pongo | Sequencing | Read depth | 14,643 |
| nssv3403499 | deletion | Pan_paniscus-X00095_Kakowet | Sequencing | Read depth | 14,858 |
| nssv3403500 | deletion | SAMN01920517 | Sequencing | Read depth | 14,560 |
| nssv3403501 | deletion | SAMN01920518 | Sequencing | Read depth | 14,544 |
| nssv3403502 | deletion | SAMN01920519 | Sequencing | Read depth | 14,560 |
| nssv3403503 | deletion | SAMN01920520 | Sequencing | Read depth | 14,560 |
| nssv3403504 | deletion | SAMN01920521 | Sequencing | Read depth | 14,554 |
| nssv3403505 | deletion | SAMN01920523 | Sequencing | Read depth | 14,551 |
| nssv3403506 | deletion | SAMN01920524 | Sequencing | Read depth | 14,557 |
| nssv3403507 | deletion | SAMN01920525 | Sequencing | Read depth | 14,553 |
| nssv3403508 | deletion | SAMN01920526 | Sequencing | Read depth | 14,541 |
| nssv3403509 | deletion | SAMN01920522 | Sequencing | Read depth | 14,557 |
| nssv3403510 | deletion | SAMN01920527 | Sequencing | Read depth | 14,562 |
| nssv3403511 | deletion | SAMN01920528 | Sequencing | Read depth | 14,776 |
| nssv3403512 | deletion | SAMN01920531 | Sequencing | Read depth | 14,608 |
| nssv3403513 | deletion | SAMN01920532 | Sequencing | Read depth | 14,576 |
| nssv3403514 | deletion | Pan_troglodytes_schweinfurthii-Yolanda | Sequencing | Read depth | 14,664 |
| nssv3403515 | deletion | SAMN01920529 | Sequencing | Read depth | 14,610 |
| nssv3403516 | deletion | SAMN01920534 | Sequencing | Read depth | 14,815 |
| nssv3403517 | deletion | SAMN01920536 | Sequencing | Read depth | 15,183 |
| nssv3403518 | deletion | SAMN01920541 | Sequencing | Read depth | 14,615 |
| nssv3403519 | deletion | Pan_troglodytes_verus-A907_Susie_A | Sequencing | Read depth | 14,602 |
| nssv3403520 | deletion | SAMN01920537 | Sequencing | Read depth | 14,600 |
| nssv3403521 | deletion | SAMN01920540 | Sequencing | Read depth | 14,584 |
| nssv3403522 | deletion | SAMN01920539 | Sequencing | Read depth | 14,708 |
| nssv3403523 | deletion | SAMN01920499 | Sequencing | Read depth | 13,641 |
| nssv3403524 | deletion | SAMN01920502 | Sequencing | Read depth | 13,644 |
| nssv3403525 | deletion | SAMN01920503 | Sequencing | Read depth | 13,626 |
| nssv3403526 | deletion | SAMN01920497 | Sequencing | Read depth | 13,633 |
| nssv3403527 | deletion | SAMN01920500 | Sequencing | Read depth | 13,643 |
| nssv3403528 | deletion | SAMN01920501 | Sequencing | Read depth | 13,643 |
| nssv3403529 | deletion | SAMN01920498 | Sequencing | Read depth | 13,636 |
| nssv3403530 | deletion | Gorilla_gorilla_gorilla-Kwan | Sequencing | Read depth | 13,471 |
| nssv3403531 | deletion | Gorilla_beringei_graueri-Mukisi | Sequencing | Read depth | 13,597 |
| nssv3403532 | deletion | Gorilla_gorilla_gorilla-Kamilah | Sequencing | Read depth | 13,471 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Assembly | Chr | Start | Stop |
|---|---|---|---|---|---|
| nssv3403453 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403454 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403455 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403456 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403457 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403458 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403459 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403460 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403461 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403462 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403463 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403464 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403465 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403466 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403467 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403468 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403469 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403470 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403471 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403472 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403473 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403474 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403475 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403476 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403477 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403478 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403479 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403480 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403481 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403482 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403483 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403484 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403485 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403486 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403487 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403488 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403489 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403490 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403491 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403492 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403493 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403494 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403495 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403496 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403497 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403498 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403499 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403500 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403501 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403502 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403503 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403504 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403505 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403506 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403507 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403508 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403509 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403510 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403511 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403512 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403513 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403514 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403515 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403516 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403517 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403518 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403519 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403520 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403521 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403522 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403523 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403524 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403525 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403526 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403527 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403528 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403529 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403530 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403531 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |
| nssv3403532 | Submitted artifact | P_pygmaeus_2.0.2 (ponAbe2) | Chr7_rando m | 4,107,880 | 4,109,241 |