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Genotype Selection - Genes

121642
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Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 2954 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 46 of 46 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
Genome View 1 gene over 1 chromosome.
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Get information.

Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
ALKBH2alkB homolog 2, alpha-ketoglutarate dependent dioxygenase 12 : 109,093,472 - 109,088,189610602
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["12", 109088189, 109093472] ], "markers": { "12": [ ["ALKBH2", "NC_000012.12", 109088189, 109093472, "alkB homolog 2, alpha-ketoglutarate dependent dioxygenase", "ABH2", 121642] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 2954 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2135878358 12 : 109,095,443 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
2 rs2135878309 12 : 109,095,372 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
3 rs2135878135 12 : 109,095,256 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
4 rs2135877982 12 : 109,095,138 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
5 rs2135877947 12 : 109,095,109 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
6 rs2135877921 12 : 109,095,086 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
7 rs2135877907 12 : 109,095,080 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
8 rs2135877875 12 : 109,095,063 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
9 rs2135877823 12 : 109,095,040 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
10 rs2135877716 12 : 109,094,992 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
11 rs2135877574 12 : 109,094,932 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
12 rs2135877553 12 : 109,094,914 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
13 rs2135877274 12 : 109,094,783 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
14 rs2135877206 12 : 109,094,742 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
15 rs2135877201 12 : 109,094,740 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
16 rs2135877136 12 : 109,094,714 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
17 rs2135877055 12 : 109,094,659 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
18 rs2135876952 12 : 109,094,608 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
19 rs2135876877 12 : 109,094,564 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
20 rs2135876428 12 : 109,094,313 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
21 rs2135876416 12 : 109,094,304 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
22 rs2135876260 12 : 109,094,185 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
23 rs2135876127 12 : 109,094,127 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
24 rs2135875900 12 : 109,093,993 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
25 rs2135875421 12 : 109,093,725 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
26 rs2135875196 12 : 109,093,629 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
27 rs2135875127 12 : 109,093,613 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
28 rs2135875122 12 : 109,093,611 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
29 rs2135875113 12 : 109,093,608 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
30 rs2135875024 12 : 109,093,586 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
31 rs2135874936 12 : 109,093,569 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
32 rs2135874723 12 : 109,093,531 2KB_upstream_variant, upstream_transcript_variant ALKBH2 Yes
33 rs2135874681 12 : 109,093,525 2KB_upstream_variant, upstream_transcript_variant ALKBH2 n/a
34 rs2135874454 12 : 109,093,468 5_prime_UTR_variant ALKBH2 Yes
35 rs2135874274 12 : 109,093,446 5_prime_UTR_variant ALKBH2 Yes
36 rs2135873999 12 : 109,093,393 5_prime_UTR_variant ALKBH2 n/a
37 rs2135873301 12 : 109,093,219 intron_variant ALKBH2 Yes
38 rs2135873109 12 : 109,093,160 intron_variant ALKBH2 Yes
39 rs2135872974 12 : 109,093,100 intron_variant ALKBH2 n/a
40 rs2135872518 12 : 109,092,957 intron_variant ALKBH2 n/a
41 rs2135872113 12 : 109,092,850 5_prime_UTR_variant, intron_variant ALKBH2 n/a
42 rs2135871935 12 : 109,092,810 5_prime_UTR_variant, intron_variant ALKBH2 Yes
43 rs2135871147 12 : 109,092,661 coding_sequence_variant, missense_variant ALKBH2 Yes
44 rs2135870711 12 : 109,092,590 coding_sequence_variant, missense_variant ALKBH2 n/a
45 rs2135870123 12 : 109,092,492 intron_variant ALKBH2 n/a
46 rs2135870104 12 : 109,092,491 intron_variant ALKBH2 n/a
47 rs2135870027 12 : 109,092,485 intron_variant ALKBH2 n/a
48 rs2135869947 12 : 109,092,478 intron_variant ALKBH2 n/a
49 rs2135869937 12 : 109,092,478 intron_variant ALKBH2 n/a
50 rs2135869751 12 : 109,092,454 intron_variant ALKBH2 n/a
{ "section": "SNP", "summary": "1 - 50 of 2954", "genes": [], "retstart": 0, "pageSize": 50, "count": 2954, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gaphttps.ncbi.nlm.nih.gov80gapphegenihttps://https.ncbi.nlm.nih.gov/gaphttps://https.ncbi.nlm.nih.govhttps://https.ncbi.nlm.nih.gov/gap/phegeni/gaphttps://https.ncbi.nlm.nih.gov/gap/phegeni/phegenitrue81175BC578B847E3_18609SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150121642 81175BC578B847E3_18609SID18MIti@81175BC578B847E3_18609SID
1 - 46 of 46 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL431180117733562228122634phs000342phs000363
41FHS_eGene_leadQTLs1121562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue202221923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts202230523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
77GTEx_Pancreas202219423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis101119923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 46 of 46"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
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