Search Summary
Search Criteria
Genotype Selection - Genes
121642
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Search Results
Association Results | No data found. | Searched by gene IDs retrieved from gene search. |
Genes | 1 - 1 of 1 | Searched by gene names and/or gene IDs. |
SNPs | 1 - 50 of 2954 | Searched by gene symbols retrieved from gene search. |
eQTL Data | 1 - 46 of 46 | Searched by gene IDs retrieved from gene search. |
dbGaP Studies | No data found. | Searched by traits retrieved from page 1 of association results. |
Genome View | 1 gene over 1 chromosome. |
Search Criteria
Select broad trait category to limit the items shown in the trait selection.
Select trait for search. Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser. This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.
Celiac Disease
Gene Search: CDKAL1
Location: MHC region
Genes
# | Symbol | Description | Location | OMIM | ||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | ALKBH2 | alkB homolog 2, alpha-ketoglutarate dependent dioxygenase | 12 | : 109,093,472 - 109,088,189 | 610602 | |||||
| ||||||||||
Association Results
No association data found.
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{
"section": "assoc",
"summary": "No data found.",
"mesh": [
],
"genes": [],
"snps": [],
"page": 1,
"call": "BuildGaP",
"pageSize": 50,
"recCount": 0
}
SNPs
# | rs# | Location | Function Class | Gene | Diversity | |
---|---|---|---|---|---|---|
1 | rs2135878358 | 12 | : 109,095,443 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
2 | rs2135878309 | 12 | : 109,095,372 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
3 | rs2135878135 | 12 | : 109,095,256 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
4 | rs2135877982 | 12 | : 109,095,138 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
5 | rs2135877947 | 12 | : 109,095,109 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
6 | rs2135877921 | 12 | : 109,095,086 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
7 | rs2135877907 | 12 | : 109,095,080 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
8 | rs2135877875 | 12 | : 109,095,063 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
9 | rs2135877823 | 12 | : 109,095,040 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
10 | rs2135877716 | 12 | : 109,094,992 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
11 | rs2135877574 | 12 | : 109,094,932 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
12 | rs2135877553 | 12 | : 109,094,914 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
13 | rs2135877274 | 12 | : 109,094,783 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
14 | rs2135877206 | 12 | : 109,094,742 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
15 | rs2135877201 | 12 | : 109,094,740 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
16 | rs2135877136 | 12 | : 109,094,714 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
17 | rs2135877055 | 12 | : 109,094,659 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
18 | rs2135876952 | 12 | : 109,094,608 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
19 | rs2135876877 | 12 | : 109,094,564 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
20 | rs2135876428 | 12 | : 109,094,313 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
21 | rs2135876416 | 12 | : 109,094,304 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
22 | rs2135876260 | 12 | : 109,094,185 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
23 | rs2135876127 | 12 | : 109,094,127 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
24 | rs2135875900 | 12 | : 109,093,993 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
25 | rs2135875421 | 12 | : 109,093,725 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
26 | rs2135875196 | 12 | : 109,093,629 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
27 | rs2135875127 | 12 | : 109,093,613 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
28 | rs2135875122 | 12 | : 109,093,611 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
29 | rs2135875113 | 12 | : 109,093,608 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
30 | rs2135875024 | 12 | : 109,093,586 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
31 | rs2135874936 | 12 | : 109,093,569 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
32 | rs2135874723 | 12 | : 109,093,531 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | Yes |
33 | rs2135874681 | 12 | : 109,093,525 | 2KB_upstream_variant, upstream_transcript_variant | ALKBH2 | n/a |
34 | rs2135874454 | 12 | : 109,093,468 | 5_prime_UTR_variant | ALKBH2 | Yes |
35 | rs2135874274 | 12 | : 109,093,446 | 5_prime_UTR_variant | ALKBH2 | Yes |
36 | rs2135873999 | 12 | : 109,093,393 | 5_prime_UTR_variant | ALKBH2 | n/a |
37 | rs2135873301 | 12 | : 109,093,219 | intron_variant | ALKBH2 | Yes |
38 | rs2135873109 | 12 | : 109,093,160 | intron_variant | ALKBH2 | Yes |
39 | rs2135872974 | 12 | : 109,093,100 | intron_variant | ALKBH2 | n/a |
40 | rs2135872518 | 12 | : 109,092,957 | intron_variant | ALKBH2 | n/a |
41 | rs2135872113 | 12 | : 109,092,850 | 5_prime_UTR_variant, intron_variant | ALKBH2 | n/a |
42 | rs2135871935 | 12 | : 109,092,810 | 5_prime_UTR_variant, intron_variant | ALKBH2 | Yes |
43 | rs2135871147 | 12 | : 109,092,661 | coding_sequence_variant, missense_variant | ALKBH2 | Yes |
44 | rs2135870711 | 12 | : 109,092,590 | coding_sequence_variant, missense_variant | ALKBH2 | n/a |
45 | rs2135870123 | 12 | : 109,092,492 | intron_variant | ALKBH2 | n/a |
46 | rs2135870104 | 12 | : 109,092,491 | intron_variant | ALKBH2 | n/a |
47 | rs2135870027 | 12 | : 109,092,485 | intron_variant | ALKBH2 | n/a |
48 | rs2135869947 | 12 | : 109,092,478 | intron_variant | ALKBH2 | n/a |
49 | rs2135869937 | 12 | : 109,092,478 | intron_variant | ALKBH2 | n/a |
50 | rs2135869751 | 12 | : 109,092,454 | intron_variant | ALKBH2 | n/a |
eQTL Data
1 - 46 of 46
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{ "section": "eqtl", "summary": "1 - 46 of 46"}
dbGaP Studies
No dbGaP study data found.
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{
"section": "GAP",
"summary": "No data found.",
"retstart": 0,
"pageSize": 50,
"count": ""
}