Search Summary
Search Criteria
Genotype Selection - Genes
135932
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Search Results
Association Results | No data found. | Searched by gene IDs retrieved from gene search. |
Genes | 1 - 1 of 1 | Searched by gene names and/or gene IDs. |
SNPs | 1 - 50 of 2178 | Searched by gene symbols retrieved from gene search. |
eQTL Data | 1 - 45 of 45 | Searched by gene IDs retrieved from gene search. |
dbGaP Studies | No data found. | Searched by traits retrieved from page 1 of association results. |
Genome View | 1 gene over 1 chromosome. |
Search Criteria
Select broad trait category to limit the items shown in the trait selection.
Select trait for search. Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser. This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.
Celiac Disease
Gene Search: CDKAL1
Location: MHC region
Genes
# | Symbol | Description | Location | OMIM | ||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | TMEM139 | transmembrane protein 139 | 7 | : 143,284,899 - 143,288,049 | 616524 | |||||
| ||||||||||
Association Results
No association data found.
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{
"section": "assoc",
"summary": "No data found.",
"mesh": [
],
"genes": [],
"snps": [],
"page": 1,
"call": "BuildGaP",
"pageSize": 50,
"recCount": 0
}
SNPs
# | rs# | Location | Function Class | Gene | Diversity | |
---|---|---|---|---|---|---|
1 | rs2116752838 | 7 | : 143,288,542 | downstream_transcript_variant, intron_variant, 500B_downstream_variant, genic_upstream_transcript_variant, upstream_transcript_variant | CASP2, TMEM139 | n/a |
2 | rs2116752445 | 7 | : 143,288,481 | downstream_transcript_variant, coding_sequence_variant, 500B_downstream_variant, missense_variant, genic_upstream_transcript_variant, upstream_transcript_variant | CASP2, TMEM139 | n/a |
3 | rs2116752066 | 7 | : 143,288,444 | downstream_transcript_variant, 500B_downstream_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant, upstream_transcript_variant | CASP2, TMEM139 | Yes |
4 | rs2116751932 | 7 | : 143,288,432 | downstream_transcript_variant, 500B_downstream_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant, upstream_transcript_variant | CASP2, TMEM139 | n/a |
5 | rs2116751813 | 7 | : 143,288,417 | downstream_transcript_variant, 500B_downstream_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant, upstream_transcript_variant | CASP2, TMEM139 | n/a |
6 | rs2116750664 | 7 | : 143,288,263 | 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
7 | rs2116750600 | 7 | : 143,288,256 | 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
8 | rs2116750463 | 7 | : 143,288,233 | 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
9 | rs2116749743 | 7 | : 143,288,157 | 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
10 | rs2116749019 | 7 | : 143,288,067 | 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
11 | rs2116748582 | 7 | : 143,288,019 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
12 | rs2116748555 | 7 | : 143,288,017 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
13 | rs2116748534 | 7 | : 143,288,016 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
14 | rs2116746523 | 7 | : 143,287,756 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
15 | rs2116746097 | 7 | : 143,287,705 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
16 | rs2116746038 | 7 | : 143,287,695 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
17 | rs2116745963 | 7 | : 143,287,690 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
18 | rs2116745900 | 7 | : 143,287,679 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
19 | rs2116745526 | 7 | : 143,287,625 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
20 | rs2116745437 | 7 | : 143,287,615 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
21 | rs2116745057 | 7 | : 143,287,562 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
22 | rs2116744233 | 7 | : 143,287,447 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
23 | rs2116744167 | 7 | : 143,287,436 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
24 | rs2116744069 | 7 | : 143,287,427 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
25 | rs2116743917 | 7 | : 143,287,395 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
26 | rs2116743647 | 7 | : 143,287,333 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
27 | rs2116743603 | 7 | : 143,287,321 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
28 | rs2116743285 | 7 | : 143,287,262 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
29 | rs2116743017 | 7 | : 143,287,194 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
30 | rs2116742763 | 7 | : 143,287,136 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
31 | rs2116742051 | 7 | : 143,286,991 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
32 | rs2116741974 | 7 | : 143,286,982 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
33 | rs2116741801 | 7 | : 143,286,957 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
34 | rs2116741549 | 7 | : 143,286,899 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
35 | rs2116741092 | 7 | : 143,286,838 | 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | Yes |
36 | rs2116740456 | 7 | : 143,286,754 | coding_sequence_variant, synonymous_variant, 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
37 | rs2116740248 | 7 | : 143,286,732 | coding_sequence_variant, missense_variant, 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
38 | rs2116739549 | 7 | : 143,286,634 | coding_sequence_variant, synonymous_variant, 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
39 | rs2116738624 | 7 | : 143,286,553 | coding_sequence_variant, missense_variant, 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
40 | rs2116737977 | 7 | : 143,286,505 | coding_sequence_variant, missense_variant, 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
41 | rs2116737191 | 7 | : 143,286,388 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | CASP2, TMEM139, TMEM139-AS1 | n/a |
42 | rs2116736512 | 7 | : 143,286,322 | intron_variant, non_coding_transcript_variant | TMEM139, TMEM139-AS1 | n/a |
43 | rs2116736489 | 7 | : 143,286,319 | intron_variant, non_coding_transcript_variant | TMEM139, TMEM139-AS1 | n/a |
44 | rs2116736197 | 7 | : 143,286,279 | intron_variant, non_coding_transcript_variant | TMEM139, TMEM139-AS1 | n/a |
45 | rs2116735957 | 7 | : 143,286,248 | intron_variant, non_coding_transcript_variant | TMEM139, TMEM139-AS1 | Yes |
46 | rs2116735061 | 7 | : 143,286,155 | missense_variant, coding_sequence_variant, intron_variant, non_coding_transcript_variant | TMEM139, TMEM139-AS1 | n/a |
47 | rs2116733681 | 7 | : 143,286,006 | synonymous_variant, coding_sequence_variant, intron_variant, non_coding_transcript_variant | TMEM139, TMEM139-AS1 | n/a |
48 | rs2116733539 | 7 | : 143,285,983 | missense_variant, coding_sequence_variant, intron_variant, non_coding_transcript_variant | TMEM139, TMEM139-AS1 | n/a |
49 | rs2116732390 | 7 | : 143,285,801 | intron_variant, non_coding_transcript_variant | TMEM139, TMEM139-AS1 | n/a |
50 | rs2116732252 | 7 | : 143,285,774 | intron_variant, non_coding_transcript_variant | TMEM139, TMEM139-AS1 | n/a |
eQTL Data
1 - 45 of 45
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{ "section": "eqtl", "summary": "1 - 45 of 45"}
dbGaP Studies
No dbGaP study data found.
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{
"section": "GAP",
"summary": "No data found.",
"retstart": 0,
"pageSize": 50,
"count": ""
}