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Genotype Selection - Genes

135932
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Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 2178 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 45 of 45 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
Genome View 1 gene over 1 chromosome.
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
TMEM139transmembrane protein 139 7 : 143,284,899 - 143,288,049616524
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["7", 143284899, 143288049] ], "markers": { "7": [ ["TMEM139", "NC_000007.14", 143284899, 143288049, "transmembrane protein 139", "", 135932] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 2178 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2116752838 7 : 143,288,542 downstream_transcript_variant, intron_variant, 500B_downstream_variant, genic_upstream_transcript_variant, upstream_transcript_variant CASP2, TMEM139 n/a
2 rs2116752445 7 : 143,288,481 downstream_transcript_variant, coding_sequence_variant, 500B_downstream_variant, missense_variant, genic_upstream_transcript_variant, upstream_transcript_variant CASP2, TMEM139 n/a
3 rs2116752066 7 : 143,288,444 downstream_transcript_variant, 500B_downstream_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant, upstream_transcript_variant CASP2, TMEM139 Yes
4 rs2116751932 7 : 143,288,432 downstream_transcript_variant, 500B_downstream_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant, upstream_transcript_variant CASP2, TMEM139 n/a
5 rs2116751813 7 : 143,288,417 downstream_transcript_variant, 500B_downstream_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant, upstream_transcript_variant CASP2, TMEM139 n/a
6 rs2116750664 7 : 143,288,263 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
7 rs2116750600 7 : 143,288,256 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
8 rs2116750463 7 : 143,288,233 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
9 rs2116749743 7 : 143,288,157 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
10 rs2116749019 7 : 143,288,067 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
11 rs2116748582 7 : 143,288,019 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
12 rs2116748555 7 : 143,288,017 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
13 rs2116748534 7 : 143,288,016 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
14 rs2116746523 7 : 143,287,756 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
15 rs2116746097 7 : 143,287,705 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
16 rs2116746038 7 : 143,287,695 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
17 rs2116745963 7 : 143,287,690 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
18 rs2116745900 7 : 143,287,679 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
19 rs2116745526 7 : 143,287,625 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
20 rs2116745437 7 : 143,287,615 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
21 rs2116745057 7 : 143,287,562 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
22 rs2116744233 7 : 143,287,447 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
23 rs2116744167 7 : 143,287,436 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
24 rs2116744069 7 : 143,287,427 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
25 rs2116743917 7 : 143,287,395 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
26 rs2116743647 7 : 143,287,333 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
27 rs2116743603 7 : 143,287,321 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
28 rs2116743285 7 : 143,287,262 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
29 rs2116743017 7 : 143,287,194 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
30 rs2116742763 7 : 143,287,136 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
31 rs2116742051 7 : 143,286,991 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
32 rs2116741974 7 : 143,286,982 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
33 rs2116741801 7 : 143,286,957 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
34 rs2116741549 7 : 143,286,899 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
35 rs2116741092 7 : 143,286,838 2KB_upstream_variant, 3_prime_UTR_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 Yes
36 rs2116740456 7 : 143,286,754 coding_sequence_variant, synonymous_variant, 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
37 rs2116740248 7 : 143,286,732 coding_sequence_variant, missense_variant, 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
38 rs2116739549 7 : 143,286,634 coding_sequence_variant, synonymous_variant, 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
39 rs2116738624 7 : 143,286,553 coding_sequence_variant, missense_variant, 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
40 rs2116737977 7 : 143,286,505 coding_sequence_variant, missense_variant, 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant CASP2, TMEM139, TMEM139-AS1 n/a
41 rs2116737191 7 : 143,286,388 2KB_upstream_variant, upstream_transcript_variant, intron_variant CASP2, TMEM139, TMEM139-AS1 n/a
42 rs2116736512 7 : 143,286,322 intron_variant, non_coding_transcript_variant TMEM139, TMEM139-AS1 n/a
43 rs2116736489 7 : 143,286,319 intron_variant, non_coding_transcript_variant TMEM139, TMEM139-AS1 n/a
44 rs2116736197 7 : 143,286,279 intron_variant, non_coding_transcript_variant TMEM139, TMEM139-AS1 n/a
45 rs2116735957 7 : 143,286,248 intron_variant, non_coding_transcript_variant TMEM139, TMEM139-AS1 Yes
46 rs2116735061 7 : 143,286,155 missense_variant, coding_sequence_variant, intron_variant, non_coding_transcript_variant TMEM139, TMEM139-AS1 n/a
47 rs2116733681 7 : 143,286,006 synonymous_variant, coding_sequence_variant, intron_variant, non_coding_transcript_variant TMEM139, TMEM139-AS1 n/a
48 rs2116733539 7 : 143,285,983 missense_variant, coding_sequence_variant, intron_variant, non_coding_transcript_variant TMEM139, TMEM139-AS1 n/a
49 rs2116732390 7 : 143,285,801 intron_variant, non_coding_transcript_variant TMEM139, TMEM139-AS1 n/a
50 rs2116732252 7 : 143,285,774 intron_variant, non_coding_transcript_variant TMEM139, TMEM139-AS1 n/a
{ "section": "SNP", "summary": "1 - 50 of 2178", "genes": [], "retstart": 0, "pageSize": 50, "count": 2178, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gaphttps.ncbi.nlm.nih.gov80gapphegenihttps://https.ncbi.nlm.nih.gov/gaphttps://https.ncbi.nlm.nih.govhttps://https.ncbi.nlm.nih.gov/gap/phegeni/gaphttps://https.ncbi.nlm.nih.gov/gap/phegeni/phegenitrueCE8AE0E879BE0D81_0881SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150135932 CE8AE0E879BE0D81_0881SID12Iknj@CE8AE0E879BE0D81_0881SID
1 - 45 of 45 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
21Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain055115020485568phs000249GSE15745
40FHS_eQTL37277266562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue202221923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis101119923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 45 of 45"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
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