Search Summary
Search Criteria
Genotype Selection - Genes
169044
Modify Search
Search Results
Association Results | 1 - 50 of 54 | Searched by gene IDs retrieved from gene search. |
Genes | 1 - 1 of 1 | Searched by gene names and/or gene IDs. |
SNPs | 1 - 50 of 131144 | Searched by gene symbols retrieved from gene search. |
eQTL Data | 1 - 44 of 44 | Searched by gene IDs retrieved from gene search. |
dbGaP Studies | Retrieving... | Searched by traits retrieved from page 1 of association results. |
Genome View | Retrieving... |
Search Criteria
Select broad trait category to limit the items shown in the trait selection.
Select trait for search. Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser. This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.
Celiac Disease
Gene Search: CDKAL1
Location: MHC region
Genes
# | Symbol | Description | Location | OMIM | ||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | COL22A1 | collagen type XXII alpha 1 chain | 8 | : 138,914,041 - 138,588,235 | 610026 | |||||
| ||||||||||
Association Results
SNPs
# | rs# | Location | Function Class | Gene | Diversity | |
---|---|---|---|---|---|---|
1 | rs2132239888 | 8 | : 138,915,928 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
2 | rs2132238965 | 8 | : 138,915,772 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
3 | rs2132238924 | 8 | : 138,915,768 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
4 | rs2132238619 | 8 | : 138,915,734 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
5 | rs2132238297 | 8 | : 138,915,682 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
6 | rs2132237427 | 8 | : 138,915,524 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
7 | rs2132237111 | 8 | : 138,915,460 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | Yes |
8 | rs2132236823 | 8 | : 138,915,417 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | Yes |
9 | rs2132235844 | 8 | : 138,915,251 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
10 | rs2132235544 | 8 | : 138,915,201 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
11 | rs2132235409 | 8 | : 138,915,176 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
12 | rs2132234611 | 8 | : 138,915,045 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
13 | rs2132233664 | 8 | : 138,914,899 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
14 | rs2132233485 | 8 | : 138,914,826 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
15 | rs2132232207 | 8 | : 138,914,614 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | Yes |
16 | rs2132232124 | 8 | : 138,914,596 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
17 | rs2132231628 | 8 | : 138,914,518 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
18 | rs2132230901 | 8 | : 138,914,419 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
19 | rs2132230649 | 8 | : 138,914,393 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
20 | rs2132230276 | 8 | : 138,914,333 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
21 | rs2132230152 | 8 | : 138,914,308 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
22 | rs2132230131 | 8 | : 138,914,307 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
23 | rs2132230098 | 8 | : 138,914,299 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
24 | rs2132230068 | 8 | : 138,914,295 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | n/a |
25 | rs2132229559 | 8 | : 138,914,242 | 2KB_upstream_variant, upstream_transcript_variant | COL22A1 | Yes |
26 | rs2132227543 | 8 | : 138,914,031 | genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant | COL22A1 | Yes |
27 | rs2132227085 | 8 | : 138,913,962 | genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant | COL22A1 | n/a |
28 | rs2132227058 | 8 | : 138,913,960 | genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant | COL22A1 | n/a |
29 | rs2132227016 | 8 | : 138,913,948 | genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant | COL22A1 | n/a |
30 | rs2132226984 | 8 | : 138,913,936 | genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant | COL22A1 | n/a |
31 | rs2132226680 | 8 | : 138,913,859 | genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant | COL22A1 | n/a |
32 | rs2132226397 | 8 | : 138,913,794 | genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant | COL22A1 | n/a |
33 | rs2132226298 | 8 | : 138,913,760 | genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant | COL22A1 | n/a |
34 | rs2132225553 | 8 | : 138,913,596 | genic_upstream_transcript_variant, intron_variant | COL22A1 | Yes |
35 | rs2132225347 | 8 | : 138,913,545 | genic_upstream_transcript_variant, intron_variant | COL22A1 | Yes |
36 | rs2132225264 | 8 | : 138,913,535 | genic_upstream_transcript_variant, intron_variant | COL22A1 | Yes |
37 | rs2132224843 | 8 | : 138,913,472 | genic_upstream_transcript_variant, intron_variant | COL22A1 | Yes |
38 | rs2132224811 | 8 | : 138,913,457 | genic_upstream_transcript_variant, intron_variant | COL22A1 | n/a |
39 | rs2132224609 | 8 | : 138,913,437 | genic_upstream_transcript_variant, intron_variant | COL22A1 | n/a |
40 | rs2132224182 | 8 | : 138,913,327 | genic_upstream_transcript_variant, intron_variant | COL22A1 | n/a |
41 | rs2132223807 | 8 | : 138,913,232 | genic_upstream_transcript_variant, intron_variant | COL22A1 | n/a |
42 | rs2132223721 | 8 | : 138,913,220 | genic_upstream_transcript_variant, intron_variant | COL22A1 | Yes |
43 | rs2132223206 | 8 | : 138,913,117 | genic_upstream_transcript_variant, intron_variant | COL22A1 | n/a |
44 | rs2132222975 | 8 | : 138,913,065 | genic_upstream_transcript_variant, intron_variant | COL22A1 | Yes |
45 | rs2132222610 | 8 | : 138,912,987 | genic_upstream_transcript_variant, intron_variant | COL22A1 | n/a |
46 | rs2132222381 | 8 | : 138,912,948 | genic_upstream_transcript_variant, intron_variant | COL22A1 | Yes |
47 | rs2132222139 | 8 | : 138,912,879 | genic_upstream_transcript_variant, intron_variant | COL22A1 | n/a |
48 | rs2132222114 | 8 | : 138,912,876 | genic_upstream_transcript_variant, intron_variant | COL22A1 | n/a |
49 | rs2132221755 | 8 | : 138,912,816 | genic_upstream_transcript_variant, intron_variant | COL22A1 | Yes |
50 | rs2132221655 | 8 | : 138,912,791 | genic_upstream_transcript_variant, intron_variant | COL22A1 | Yes |
eQTL Data
1 - 44 of 44
Modify Search
{ "section": "eqtl", "summary": "1 - 44 of 44"}