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Genotype Selection - Genes

169044
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Association Results 1 - 50 of 54 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 131144 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 44 of 44 Searched by gene IDs retrieved from gene search.
dbGaP Studies  Retrieving... Searched by traits retrieved from page 1 of association results.
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Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
COL22A1collagen type XXII alpha 1 chain 8 : 138,914,041 - 138,588,235610026
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["8", 138588235, 138914041] ], "markers": { "8": [ ["COL22A1", "NC_000008.11", 138588235, 138914041, "collagen type XXII alpha 1 chain", "", 169044] ] }, "unmapped": [ ] } }

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

1 - 50 of 54 < Previous Next >  Page  GoDownload Modify Search
#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Dehydroepiandrosterone rs10505710 intergenic COL22A1, KCNK9 8 : 139,288,422 7.005 x 10-13 dbGaP phs000342 European 17903292
2 Cardiovascular Diseases rs10505709 intergenic COL22A1, KCNK9 8 : 139,273,861 1.312 x 10-10 dbGaP phs000342 European 17903304
3 Cardiovascular Diseases rs10505709 intergenic COL22A1, KCNK9 8 : 139,273,861 2.287 x 10-10 dbGaP phs000342 European 17903304
4 Gastrointestinal Microbiome rs2318350 nearGene-5 COL22A1 8 : 138,914,773 4.000 x 10-9 NHGRI European 27723756
5 Microbiota rs2318350 nearGene-5 COL22A1 8 : 138,914,773 4.000 x 10-9 NHGRI European 27723756
6 Dehydroepiandrosterone rs10505710 intergenic COL22A1, KCNK9 8 : 139,288,422 1.078 x 10-8 dbGaP phs000342 European 17903292
7 Vitamin K rs4645543 intergenic COL22A1, KCNK9 8 : 139,483,999 2.000 x 10-7 NHGRI European 25411281
8 Platelet Function Tests rs7844565 intron COL22A1 8 : 138,674,499 2.180 x 10-7 dbGaP phs000375 African American
9 Overweight rs7841806 intergenic COL22A1, KCNK9 8 : 139,323,570 3.000 x 10-7 NHGRI European 25811787
10 Uric Acid rs7841806 intergenic COL22A1, KCNK9 8 : 139,323,570 3.000 x 10-7 NHGRI European 25811787
11 Cerebrospinal Fluid rs36056951 intergenic COL22A1, KCNK9 8 : 138,953,555 4.000 x 10-7 NHGRI European 26252872
12 tau Proteins rs36056951 intergenic COL22A1, KCNK9 8 : 138,953,555 4.000 x 10-7 NHGRI European 26252872
13 Adipose Tissue rs16910486 intergenic COL22A1, KCNK9 8 : 139,340,115 6.000 x 10-7 NHGRI European 26480920
14 Adiponectin rs2468677 intergenic COL22A1, KCNK9 8 : 139,507,274 8.000 x 10-7 NHGRI European 21700879
15 S-(3-hydroxypropyl)cysteine N-acetate rs61496269 intron COL22A1 8 : 138,596,475 2.000 x 10-6 NHGRI Oceania
East Asian
African
European
African American
Hispanic
26053186
16 Smoking rs61496269 intron COL22A1 8 : 138,596,475 2.000 x 10-6 NHGRI Oceania
East Asian
African
European
African American
Hispanic
26053186
17 Parkinson Disease rs7004938 intergenic COL22A1, KCNK9 8 : 139,246,982 2.970 x 10-6 dbGaP phs000089 European 19915575
18 Overweight rs7841806 intergenic COL22A1, KCNK9 8 : 139,323,570 3.000 x 10-6 NHGRI European 25811787
19 Uric Acid rs7841806 intergenic COL22A1, KCNK9 8 : 139,323,570 3.000 x 10-6 NHGRI European 25811787
20 Electrocardiography rs2319420 intergenic COL22A1, KCNK9 8 : 139,595,064 3.696 x 10-6 dbGaP phs000342 European 17903306
21 amyloid beta-protein (1-42) rs36056951 intergenic COL22A1, KCNK9 8 : 138,953,555 4.000 x 10-6 NHGRI European 26252872
22 Cholesterol, HDL rs2468680 intergenic COL22A1, KCNK9 8 : 139,508,977 4.020 x 10-6 dbGaP phs000342 European 17903299
23 Parkinson Disease rs4556079 intergenic COL22A1, KCNK9 8 : 139,220,692 4.790 x 10-6 dbGaP phs000089 European 19915575
24 Parkinson Disease rs11781101 intergenic COL22A1, KCNK9 8 : 139,235,419 5.310 x 10-6 dbGaP phs000089 European 19915575
25 Parkinson Disease rs11783351 intergenic COL22A1, KCNK9 8 : 139,247,296 5.510 x 10-6 dbGaP phs000089 European 19915575
26 Platelet Function Tests rs4736085 intron COL22A1 8 : 138,853,891 8.050 x 10-6 dbGaP phs000375 African American
27 Anxiety Disorders rs4736192 intergenic COL22A1, KCNK9 8 : 138,967,582 9.000 x 10-6 NHGRI African
European
African American
25390645
28 Asthma rs6988229 intron COL22A1 8 : 138,872,266 9.000 x 10-6 NHGRI European 23508266
29 Bronchodilator Agents rs6988229 intron COL22A1 8 : 138,872,266 9.000 x 10-6 NHGRI European 23508266
30 Creatinine rs11778126 intergenic COL22A1, KCNK9 8 : 139,520,070 1.129 x 10-5 dbGaP phs000221 European
31 Platelet Function Tests rs3857923 intergenic COL22A1, KCNK9 8 : 139,363,259 1.170 x 10-5 dbGaP phs000375 African American
32 Creatinine rs6993113 intergenic COL22A1, KCNK9 8 : 139,523,218 1.192 x 10-5 dbGaP phs000221 European
33 Creatinine rs4736281 intergenic COL22A1, KCNK9 8 : 139,563,415 1.360 x 10-5 dbGaP phs000221 European
34 Platelet Function Tests rs3857923 intergenic COL22A1, KCNK9 8 : 139,363,259 1.455 x 10-5 dbGaP phs000375 African American
35 Platelet Function Tests rs11991611 intron COL22A1 8 : 138,595,147 1.527 x 10-5 dbGaP phs000375 African American
36 Platelet Function Tests rs7844565 intron COL22A1 8 : 138,674,499 1.744 x 10-5 dbGaP phs000375 African American
37 Platelet Function Tests rs1320271 intron COL22A1 8 : 138,771,722 2.062 x 10-5 dbGaP phs000375 European
38 Language Tests rs16910093 intergenic COL22A1, KCNK9 8 : 139,081,653 2.225 x 10-5 dbGaP phs000267 European
39 Hemoglobin A, Glycosylated rs13270196 intergenic COL22A1, KCNK9 8 : 139,295,939 2.272 x 10-5 dbGaP phs000086 European 19875614
40 Platelet Function Tests rs10091563 cds-synon COL22A1 8 : 138,635,019 2.661 x 10-5 dbGaP phs000375 African American
41 Hemoglobin A, Glycosylated rs994770 intergenic COL22A1, KCNK9 8 : 139,321,079 2.777 x 10-5 dbGaP phs000086 European 19875614
42 Language Tests rs12677892 intergenic COL22A1, KCNK9 8 : 139,025,641 5.062 x 10-5 dbGaP phs000267 European
43 Child Development Disorders, Pervasive rs16910093 intergenic COL22A1, KCNK9 8 : 139,081,653 5.201 x 10-5 dbGaP phs000267 European
44 Adiponectin rs1588023 intergenic COL22A1, KCNK9 8 : 139,011,926 5.530 x 10-5 dbGaP phs000342 European 17903298
45 Mental Competency rs4736185 intron COL22A1 8 : 138,757,750 5.881 x 10-5 dbGaP phs000338 European
46 Echocardiography rs2468680 intergenic COL22A1, KCNK9 8 : 139,508,977 6.124 x 10-5 dbGaP phs000342 European 17903301
47 Leukocyte Count rs6577977 intergenic COL22A1, KCNK9 8 : 138,963,755 6.217 x 10-5 dbGaP phs000221 European
48 Muscle, Skeletal rs2318830 intergenic COL22A1, KCNK9 8 : 139,016,690 7.304 x 10-5 dbGaP phs000221 European
49 Hemoglobin A, Glycosylated rs4736239 intergenic COL22A1, KCNK9 8 : 139,289,510 7.421 x 10-5 dbGaP phs000086 European 19875614
50 Erythrocyte Indices rs13253216 intergenic COL22A1, KCNK9 8 : 138,984,582 7.430 x 10-5 dbGaP phs000221 European
{ "section": "assoc", "summary": "1 - 50 of 54", "mesh": [ "Adiponectin", "Adipose Tissue", "Anxiety Disorders", "Asthma", "Bronchodilator Agents", "Cardiovascular Diseases", "Cerebrospinal Fluid", "Child Development Disorders, Pervasive", "Cholesterol, HDL", "Creatinine", "Dehydroepiandrosterone", "Echocardiography", "Electrocardiography", "Erythrocyte Indices", "Gastrointestinal Microbiome", "Hemoglobin A, Glycosylated", "Language Tests", "Leukocyte Count", "Mental Competency", "Microbiota", "Muscle, Skeletal", "Overweight", "Parkinson Disease", "Platelet Function Tests", "S-(3-hydroxypropyl)cysteine N-acetate", "Smoking", "Uric Acid", "Vitamin K", "amyloid beta-protein (1-42)", "tau Proteins" ], "genes": [51305, 169044], "snps": [994770, 1320271, 1588023, 2318350, 2318830, 2319420, 2468677, 2468680, 3857923, 4556079, 4645543, 4736085, 4736185, 4736192, 4736239, 4736281, 6577977, 6988229, 6993113, 7004938, 7841806, 7844565, 10091563, 10505709, 10505710, 11778126, 11781101, 11783351, 11991611, 12677892, 13253216, 13270196, 16910093, 16910486, 36056951, 61496269], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 54 }

Get information.SNPs

1 - 50 of 131144 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2132239888 8 : 138,915,928 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
2 rs2132238965 8 : 138,915,772 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
3 rs2132238924 8 : 138,915,768 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
4 rs2132238619 8 : 138,915,734 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
5 rs2132238297 8 : 138,915,682 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
6 rs2132237427 8 : 138,915,524 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
7 rs2132237111 8 : 138,915,460 2KB_upstream_variant, upstream_transcript_variant COL22A1 Yes
8 rs2132236823 8 : 138,915,417 2KB_upstream_variant, upstream_transcript_variant COL22A1 Yes
9 rs2132235844 8 : 138,915,251 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
10 rs2132235544 8 : 138,915,201 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
11 rs2132235409 8 : 138,915,176 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
12 rs2132234611 8 : 138,915,045 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
13 rs2132233664 8 : 138,914,899 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
14 rs2132233485 8 : 138,914,826 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
15 rs2132232207 8 : 138,914,614 2KB_upstream_variant, upstream_transcript_variant COL22A1 Yes
16 rs2132232124 8 : 138,914,596 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
17 rs2132231628 8 : 138,914,518 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
18 rs2132230901 8 : 138,914,419 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
19 rs2132230649 8 : 138,914,393 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
20 rs2132230276 8 : 138,914,333 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
21 rs2132230152 8 : 138,914,308 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
22 rs2132230131 8 : 138,914,307 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
23 rs2132230098 8 : 138,914,299 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
24 rs2132230068 8 : 138,914,295 2KB_upstream_variant, upstream_transcript_variant COL22A1 n/a
25 rs2132229559 8 : 138,914,242 2KB_upstream_variant, upstream_transcript_variant COL22A1 Yes
26 rs2132227543 8 : 138,914,031 genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant COL22A1 Yes
27 rs2132227085 8 : 138,913,962 genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant COL22A1 n/a
28 rs2132227058 8 : 138,913,960 genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant COL22A1 n/a
29 rs2132227016 8 : 138,913,948 genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant COL22A1 n/a
30 rs2132226984 8 : 138,913,936 genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant COL22A1 n/a
31 rs2132226680 8 : 138,913,859 genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant COL22A1 n/a
32 rs2132226397 8 : 138,913,794 genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant COL22A1 n/a
33 rs2132226298 8 : 138,913,760 genic_upstream_transcript_variant, 5_prime_UTR_variant, non_coding_transcript_variant COL22A1 n/a
34 rs2132225553 8 : 138,913,596 genic_upstream_transcript_variant, intron_variant COL22A1 Yes
35 rs2132225347 8 : 138,913,545 genic_upstream_transcript_variant, intron_variant COL22A1 Yes
36 rs2132225264 8 : 138,913,535 genic_upstream_transcript_variant, intron_variant COL22A1 Yes
37 rs2132224843 8 : 138,913,472 genic_upstream_transcript_variant, intron_variant COL22A1 Yes
38 rs2132224811 8 : 138,913,457 genic_upstream_transcript_variant, intron_variant COL22A1 n/a
39 rs2132224609 8 : 138,913,437 genic_upstream_transcript_variant, intron_variant COL22A1 n/a
40 rs2132224182 8 : 138,913,327 genic_upstream_transcript_variant, intron_variant COL22A1 n/a
41 rs2132223807 8 : 138,913,232 genic_upstream_transcript_variant, intron_variant COL22A1 n/a
42 rs2132223721 8 : 138,913,220 genic_upstream_transcript_variant, intron_variant COL22A1 Yes
43 rs2132223206 8 : 138,913,117 genic_upstream_transcript_variant, intron_variant COL22A1 n/a
44 rs2132222975 8 : 138,913,065 genic_upstream_transcript_variant, intron_variant COL22A1 Yes
45 rs2132222610 8 : 138,912,987 genic_upstream_transcript_variant, intron_variant COL22A1 n/a
46 rs2132222381 8 : 138,912,948 genic_upstream_transcript_variant, intron_variant COL22A1 Yes
47 rs2132222139 8 : 138,912,879 genic_upstream_transcript_variant, intron_variant COL22A1 n/a
48 rs2132222114 8 : 138,912,876 genic_upstream_transcript_variant, intron_variant COL22A1 n/a
49 rs2132221755 8 : 138,912,816 genic_upstream_transcript_variant, intron_variant COL22A1 Yes
50 rs2132221655 8 : 138,912,791 genic_upstream_transcript_variant, intron_variant COL22A1 Yes
{ "section": "SNP", "summary": "1 - 50 of 131144", "genes": [], "retstart": 0, "pageSize": 50, "count": 131144, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gaphttps.ncbi.nlm.nih.gov80gapphegenihttps://https.ncbi.nlm.nih.gov/gaphttps://https.ncbi.nlm.nih.govhttps://https.ncbi.nlm.nih.gov/gap/phegeni/gaphttps://https.ncbi.nlm.nih.gov/gap/phegeni/phegenitrueCE89181E7958B131_2054SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150169044 CE89181E7958B131_2054SID14MIB9@CE89181E7958B131_2054SID
1 - 44 of 44 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
7Mapping the Genetic Architecture of Gene Expression in Human Liver101142718462017NAGSE9588
21Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain088115020485568phs000249GSE15745
40FHS_eQTL124611591434562228122634phs000342phs000363
41FHS_eGene_leadQTLs1011562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum202223423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland404415923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial202236023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum202213823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex202212723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9202211523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus202210223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus202210323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue202221923715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction202217523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate202212023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
84GTEx_Stomach202220223715323phs000424.v6phs000424.v6
85GTEx_Testis303319923715323phs000424.v6phs000424.v6
86GTEx_Thyroid123234723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 44 of 44"}
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