U.S. flag

An official website of the United States government

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Summary

Search Criteria

Genotype Selection - Genes

22797
Modify Search

Search Results

Association Results 1 - 17 of 17 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 84488 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 46 of 46 Searched by gene IDs retrieved from gene search.
dbGaP Studies  Retrieving... Searched by traits retrieved from association results.
Genome View 1 gene over 1 chromosome.
Modify Search Show All Hide All

Get information.

Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
TFECtranscription factor EC 7 : 116,159,896 - 115,935,152604732
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["7", 115935152, 116159896] ], "markers": { "7": [ ["TFEC", "NC_000007.14", 115935152, 116159896, "transcription factor EC", "TCFEC, TFE-C, TFEC-L, TFECL, bHLHe34, hTFEC-L", 22797] ] }, "unmapped": [ ] } }

Get information.Genome View

Ideogram SetupGet information.

Orientation:   
Include:         
Display:   
Chromosomes:   
UpdateDownload
Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
Creating ideogram...
Click on ideogram annotation to show sequence display

Get information.Association Results

1 - 17 of 17 Download Modify Search
#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Tonsillectomy rs2023703 intergenic RAC1P6, TFEC 7 : 115,304,865 8.000 x 10-10 NHGRI European 27182965
2 Lupus Erythematosus, Systemic rs1464776 intergenic TFEC, TES 7 : 116,068,511 1.550 x 10-6 dbGaP phs000202 European 18204446
3 Lupus Erythematosus, Systemic rs1464776 intergenic TFEC, TES 7 : 116,068,511 1.550 x 10-6 dbGaP phs000216 European 18204446
4 Electrocardiography rs10274759 intergenic RAC1P6, TFEC 7 : 115,274,554 3.000 x 10-6 NHGRI European 24324551
5 Trypanosoma cruzi rs10274759 intergenic RAC1P6, TFEC 7 : 115,274,554 3.000 x 10-6 NHGRI European 24324551
6 Smoking Cessation rs1918526 intergenic RAC1P6, TFEC 7 : 115,497,954 7.000 x 10-6 NHGRI South Asian 24665060
7 Platelet Function Tests rs13246549 intergenic RAC1P6, TFEC 7 : 115,407,797 9.400 x 10-6 dbGaP phs000375 African American
8 Platelet Function Tests rs7810586 intergenic RAC1P6, TFEC 7 : 115,773,660 1.113 x 10-5 dbGaP phs000375 European
9 Platelet Function Tests rs6466556 intergenic RAC1P6, TFEC 7 : 115,773,989 1.113 x 10-5 dbGaP phs000375 European
10 Platelet Function Tests rs10268202 intergenic RAC1P6, TFEC 7 : 115,751,565 1.541 x 10-5 dbGaP phs000375 European
11 Child Development Disorders, Pervasive rs6955306 intergenic RAC1P6, TFEC 7 : 115,758,825 3.794 x 10-5 dbGaP phs000267 European
12 Alanine Transaminase rs1316857 intergenic RAC1P6, TFEC 7 : 115,913,651 4.288 x 10-5 dbGaP phs000215 European
13 Forced Expiratory Volume rs11979121 intergenic RAC1P6, TFEC 7 : 115,807,381 5.838 x 10-5 dbGaP phs000221 European
14 Hemoglobin A, Glycosylated rs12673240 intergenic TFEC, TES 7 : 116,099,511 8.306 x 10-5 dbGaP phs000086 European 19875614
15 Leukoaraiosis rs11764997 intron TFEC 7 : 116,008,166 9.333 x 10-5 dbGaP phs000379 African American
16 Gastrointestinal Neoplasms rs12538704 intergenic RAC1P6, TFEC 7 : 115,149,141 9.766 x 10-5 dbGaP phs000361 East Asian 23504502
17 Leukoaraiosis rs2222542 intron TFEC 7 : 116,015,987 9.870 x 10-5 dbGaP phs000379 African American
{ "section": "assoc", "summary": "1 - 17 of 17", "mesh": [ "Alanine Transaminase", "Child Development Disorders, Pervasive", "Electrocardiography", "Forced Expiratory Volume", "Gastrointestinal Neoplasms", "Hemoglobin A, Glycosylated", "Leukoaraiosis", "Lupus Erythematosus, Systemic", "Platelet Function Tests", "Smoking Cessation", "Tonsillectomy", "Trypanosoma cruzi" ], "genes": [22797, 26136, 100422657], "snps": [1316857, 1464776, 1918526, 2023703, 2222542, 6466556, 6955306, 7810586, 10268202, 10274759, 11764997, 11979121, 12538704, 12673240, 13246549], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 17 }

Get information.SNPs

1 - 50 of 84488 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2131086702 7 : 116,090,324 intron_variant, genic_upstream_transcript_variant TFEC Yes
2 rs2131086692 7 : 116,090,321 intron_variant, genic_upstream_transcript_variant TFEC Yes
3 rs2131086579 7 : 116,090,279 intron_variant, genic_upstream_transcript_variant TFEC n/a
4 rs2131086396 7 : 116,090,242 intron_variant, genic_upstream_transcript_variant TFEC Yes
5 rs2131086115 7 : 116,090,159 intron_variant, genic_upstream_transcript_variant TFEC n/a
6 rs2131086023 7 : 116,090,129 intron_variant, genic_upstream_transcript_variant TFEC Yes
7 rs2131085885 7 : 116,090,097 intron_variant, genic_upstream_transcript_variant TFEC n/a
8 rs2131085655 7 : 116,090,014 intron_variant, genic_upstream_transcript_variant TFEC n/a
9 rs2131085327 7 : 116,089,919 intron_variant, genic_upstream_transcript_variant TFEC n/a
10 rs2131085068 7 : 116,089,832 intron_variant, genic_upstream_transcript_variant TFEC n/a
11 rs2131084754 7 : 116,089,769 intron_variant, genic_upstream_transcript_variant TFEC n/a
12 rs2131084062 7 : 116,089,599 intron_variant, genic_upstream_transcript_variant TFEC Yes
13 rs2131083832 7 : 116,089,508 intron_variant, genic_upstream_transcript_variant TFEC n/a
14 rs2131083798 7 : 116,089,502 intron_variant, genic_upstream_transcript_variant TFEC Yes
15 rs2131083405 7 : 116,089,398 intron_variant, genic_upstream_transcript_variant TFEC n/a
16 rs2131082993 7 : 116,089,278 intron_variant, genic_upstream_transcript_variant TFEC n/a
17 rs2131082797 7 : 116,089,209 intron_variant, genic_upstream_transcript_variant TFEC n/a
18 rs2131082163 7 : 116,088,997 intron_variant, genic_upstream_transcript_variant TFEC Yes
19 rs2131080931 7 : 116,088,632 intron_variant, genic_upstream_transcript_variant TFEC n/a
20 rs2131080883 7 : 116,088,615 intron_variant, genic_upstream_transcript_variant TFEC n/a
21 rs2131080724 7 : 116,088,578 intron_variant, genic_upstream_transcript_variant TFEC n/a
22 rs2131080548 7 : 116,088,520 intron_variant, genic_upstream_transcript_variant TFEC Yes
23 rs2131080494 7 : 116,088,508 intron_variant, genic_upstream_transcript_variant TFEC n/a
24 rs2131080075 7 : 116,088,369 intron_variant, genic_upstream_transcript_variant TFEC Yes
25 rs2131079814 7 : 116,088,294 intron_variant, genic_upstream_transcript_variant TFEC n/a
26 rs2131079734 7 : 116,088,266 intron_variant, genic_upstream_transcript_variant TFEC n/a
27 rs2131079453 7 : 116,088,228 intron_variant, genic_upstream_transcript_variant TFEC Yes
28 rs2131078954 7 : 116,088,084 intron_variant, genic_upstream_transcript_variant TFEC n/a
29 rs2131078832 7 : 116,088,046 intron_variant, genic_upstream_transcript_variant TFEC n/a
30 rs2131078775 7 : 116,088,036 intron_variant, genic_upstream_transcript_variant TFEC Yes
31 rs2131078476 7 : 116,087,957 intron_variant, genic_upstream_transcript_variant TFEC n/a
32 rs2131078459 7 : 116,087,944 intron_variant, genic_upstream_transcript_variant TFEC n/a
33 rs2131078383 7 : 116,087,914 intron_variant, genic_upstream_transcript_variant TFEC Yes
34 rs2131078364 7 : 116,087,892 intron_variant, genic_upstream_transcript_variant TFEC Yes
35 rs2131078277 7 : 116,087,851 intron_variant, genic_upstream_transcript_variant TFEC n/a
36 rs2131077854 7 : 116,087,717 intron_variant, genic_upstream_transcript_variant TFEC Yes
37 rs2131077813 7 : 116,087,698 intron_variant, genic_upstream_transcript_variant TFEC n/a
38 rs2131077730 7 : 116,087,681 intron_variant, genic_upstream_transcript_variant TFEC n/a
39 rs2131077722 7 : 116,087,680 intron_variant, genic_upstream_transcript_variant TFEC n/a
40 rs2131077699 7 : 116,087,672 intron_variant, genic_upstream_transcript_variant TFEC Yes
41 rs2131077690 7 : 116,087,672 intron_variant, genic_upstream_transcript_variant TFEC n/a
42 rs2131077679 7 : 116,087,664 intron_variant, genic_upstream_transcript_variant TFEC Yes
43 rs2131077551 7 : 116,087,609 intron_variant, genic_upstream_transcript_variant TFEC Yes
44 rs2131077400 7 : 116,087,560 intron_variant, genic_upstream_transcript_variant TFEC Yes
45 rs2131077174 7 : 116,087,486 intron_variant, genic_upstream_transcript_variant TFEC Yes
46 rs2131077161 7 : 116,087,482 intron_variant, genic_upstream_transcript_variant TFEC n/a
47 rs2131077115 7 : 116,087,477 intron_variant, genic_upstream_transcript_variant TFEC n/a
48 rs2131076574 7 : 116,087,298 intron_variant, genic_upstream_transcript_variant TFEC Yes
49 rs2131076547 7 : 116,087,285 intron_variant, genic_upstream_transcript_variant TFEC n/a
50 rs2131076384 7 : 116,087,237 intron_variant, genic_upstream_transcript_variant TFEC Yes
{ "section": "SNP", "summary": "1 - 50 of 84488", "genes": [], "retstart": 0, "pageSize": 50, "count": 84488, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gaphttps.ncbi.nlm.nih.gov80gapphegenihttps://https.ncbi.nlm.nih.gov/gaphttps://https.ncbi.nlm.nih.govhttps://https.ncbi.nlm.nih.gov/gap/phegeni/gaphttps://https.ncbi.nlm.nih.gov/gap/phegeni/phegenitrueCE8B37FD7932CF81_0377SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap15022797 CE8B37FD7932CF81_0377SID1jiCjf7SeT7pIJ5MufVSii5Hu87iIxIukgw_kP3pZhEku@CE8B37FD7932CF81_0377SID
1 - 46 of 46 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
21Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain022215020485568phs000249GSE15745
40FHS_eQTL667904118091562228122634phs000342phs000363
41FHS_eGene_leadQTLs2021562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary302314123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum202213823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia202212423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue202221923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver202213823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
77GTEx_Pancreas202219423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate202212023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen202211923715323phs000424.v6phs000424.v6
84GTEx_Stomach202220223715323phs000424.v6phs000424.v6
85GTEx_Testis101119923715323phs000424.v6phs000424.v6
86GTEx_Thyroid202234723715323phs000424.v6phs000424.v6
87GTEx_Uterus20228923715323phs000424.v6phs000424.v6
88GTEx_Vagina20229823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood202243023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 46 of 46"}
External link. Please review our privacy policy.