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Genotype Selection - Genes

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Association Results 1 - 38 of 38 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 188071 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 46 of 46 Searched by gene IDs retrieved from gene search.
dbGaP Studies 1 - 50 of 147Searched by traits retrieved from association results.
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
PRKCAprotein kinase C alpha 17 : 66,302,613 - 66,810,743176960
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["17", 66302613, 66810743] ], "markers": { "17": [ ["PRKCA", "NC_000017.11", 66302613, 66810743, "protein kinase C alpha", "AAG6, PKC-alpha, PKCA, PKCI+/-, PKCalpha, PRKACA", 5578] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

1 - 38 of 38 Download Modify Search
#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Electrocardiography rs9892651 intron PRKCA 17 : 66,307,675 3.000 x 10-14 NHGRI European 24952745
2 Electrocardiography rs9912468 intron PRKCA 17 : 66,322,239 3.000 x 10-12 NHGRI South Asian
African
African American
European
27659466
3 Electrocardiography rs9912468 intron PRKCA 17 : 66,322,239 2.000 x 10-11 NHGRI South Asian
African
African American
European
27659466
4 Electrocardiography rs9912468 intron PRKCA 17 : 66,322,239 5.000 x 10-11 NHGRI South Asian
African
African American
European
27659466
5 Electrocardiography rs9912468 intron PRKCA 17 : 66,322,239 1.000 x 10-10 NHGRI African
European
African American
27577874
6 Electrocardiography rs9912468 intron PRKCA 17 : 66,322,239 1.000 x 10-8 NHGRI African
European
African American
27577874
7 Body Height rs3889237 intron PRKCA 17 : 66,783,312 3.000 x 10-8 NHGRI African
African American
22021425
8 Eating rs74902201 intron PRKCA 17 : 66,715,445 6.000 x 10-8 NHGRI European 27106561
9 Mental Health rs74902201 intron PRKCA 17 : 66,715,445 6.000 x 10-8 NHGRI European 27106561
10 Gout rs9900205 intron PRKCA 17 : 66,718,990 1.000 x 10-7 NHGRI East Asian 22179738
11 Eating rs74902201 intron PRKCA 17 : 66,715,445 6.000 x 10-7 NHGRI European 27106561
12 Mental Health rs74902201 intron PRKCA 17 : 66,715,445 6.000 x 10-7 NHGRI European 27106561
13 Auditory Cortex rs4791051 intron PRKCA 17 : 66,542,213 2.000 x 10-6 NHGRI European 25130324
14 Lactate Dehydrogenases rs7220007 intron PRKCA 17 : 66,567,402 2.148 x 10-6 dbGaP phs000215 European
15 Lactate Dehydrogenases rs9904266 intron PRKCA 17 : 66,576,352 2.435 x 10-6 dbGaP phs000215 European
16 Lactate Dehydrogenases rs8080721 intron PRKCA 17 : 66,589,239 2.538 x 10-6 dbGaP phs000215 European
17 Vascular Calcification rs11651708 intron PRKCA 17 : 66,521,195 3.000 x 10-6 NHGRI African
European
African American
23870195
18 Neuralgia rs887797 intron PRKCA 17 : 66,583,327 4.000 x 10-6 NHGRI NR 28051079
19 Osteoarthritis rs887797 intron PRKCA 17 : 66,583,327 4.000 x 10-6 NHGRI NR 28051079
20 Stress Disorders, Post-Traumatic rs7207499 intron PRKCA 17 : 66,451,047 5.000 x 10-6 NHGRI African
European
African American
23726511
21 Platelet Function Tests rs17710992 ncRNA PRKCA 17 : 66,777,510 1.216 x 10-5 dbGaP phs000375 European
22 Child Development Disorders, Pervasive rs7207499 intron PRKCA 17 : 66,451,047 1.457 x 10-5 dbGaP phs000267 European
23 Child Development Disorders, Pervasive rs7207499 intron PRKCA 17 : 66,451,047 1.670 x 10-5 dbGaP phs000267 European
24 Platelet Function Tests rs17710992 ncRNA PRKCA 17 : 66,777,510 1.819 x 10-5 dbGaP phs000375 European
25 Personality rs7207097 intron PRKCA 17 : 66,401,808 2.052 x 10-5 dbGaP phs000338 European
26 C-Reactive Protein rs11867898 intergenic RNA5SP444, PRKCA 17 : 66,299,203 2.118 x 10-5 dbGaP phs000221 European
27 Cholesterol rs9894916 intron PRKCA 17 : 66,712,278 2.152 x 10-5 dbGaP phs000221 European
28 Arteries rs4644888 intron PRKCA 17 : 66,749,572 2.253 x 10-5 dbGaP phs000221 European
29 Cholesterol rs9894916 intron PRKCA 17 : 66,712,278 2.554 x 10-5 dbGaP phs000221 European
30 C-Reactive Protein rs11658474 intergenic RNA5SP444, PRKCA 17 : 66,285,340 3.591 x 10-5 dbGaP phs000221 European
31 Cholesterol, LDL rs9894916 intron PRKCA 17 : 66,712,278 3.686 x 10-5 dbGaP phs000221 European
32 Child Development Disorders, Pervasive rs956952 intron PRKCA 17 : 66,522,389 4.377 x 10-5 dbGaP phs000267 European
33 Child Development Disorders, Pervasive rs16959447 intron PRKCA 17 : 66,516,223 4.639 x 10-5 dbGaP phs000267 European
34 Alcoholism rs973753 intron PRKCA 17 : 66,432,564 4.730 x 10-5 dbGaP phs000125 European
35 Testosterone rs4790911 intron PRKCA 17 : 66,414,797 4.874 x 10-5 dbGaP phs000215 European
36 Diabetes Mellitus, Type 2 rs7207345 intron PRKCA 17 : 66,667,167 7.476 x 10-5 dbGaP phs000100 European 17463248
37 Testosterone rs4790911 intron PRKCA 17 : 66,414,797 7.764 x 10-5 dbGaP phs000215 European
38 Pancreatic Neoplasms rs17634425 intron PRKCA 17 : 66,387,958 1.454 x 10-4 dbGaP phs000206 NR 19648918
{ "section": "assoc", "summary": "1 - 38 of 38", "mesh": [ "Alcoholism", "Arteries", "Auditory Cortex", "Body Height", "C-Reactive Protein", "Child Development Disorders, Pervasive", "Cholesterol", "Cholesterol, LDL", "Diabetes Mellitus, Type 2", "Eating", "Electrocardiography", "Gout", "Lactate Dehydrogenases", "Mental Health", "Neuralgia", "Osteoarthritis", "Pancreatic Neoplasms", "Personality", "Platelet Function Tests", "Stress Disorders, Post-Traumatic", "Testosterone", "Vascular Calcification" ], "genes": [5578, 100873690], "snps": [887797, 956952, 973753, 3889237, 4644888, 4790911, 4791051, 7207097, 7207345, 7207499, 7220007, 8080721, 9892651, 9894916, 9900205, 9904266, 9912468, 11651708, 11658474, 11867898, 16959447, 17634425, 17710992, 74902201], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 38 }

Get information.SNPs

1 - 50 of 188071 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2151413808 17 : 66,811,235 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
2 rs2151413806 17 : 66,811,221 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
3 rs2151413803 17 : 66,811,212 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
4 rs2151413801 17 : 66,811,195 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
5 rs2151413800 17 : 66,811,188 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
6 rs2151413796 17 : 66,811,187 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
7 rs2151413793 17 : 66,811,177 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
8 rs2151413791 17 : 66,811,175 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
9 rs2151413789 17 : 66,811,169 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
10 rs2151413787 17 : 66,811,164 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
11 rs2151413782 17 : 66,811,151 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
12 rs2151413779 17 : 66,811,148 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
13 rs2151413776 17 : 66,811,146 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
14 rs2151413774 17 : 66,811,142 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
15 rs2151413772 17 : 66,811,136 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
16 rs2151413768 17 : 66,811,134 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
17 rs2151413762 17 : 66,811,130 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
18 rs2151413760 17 : 66,811,123 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
19 rs2151413758 17 : 66,811,102 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
20 rs2151413755 17 : 66,811,095 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
21 rs2151413753 17 : 66,811,085 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
22 rs2151413750 17 : 66,811,085 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
23 rs2151413749 17 : 66,811,062 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
24 rs2151413748 17 : 66,811,043 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
25 rs2151413746 17 : 66,811,035 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
26 rs2151413743 17 : 66,811,027 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
27 rs2151413740 17 : 66,811,021 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
28 rs2151413737 17 : 66,811,011 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
29 rs2151413733 17 : 66,811,010 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
30 rs2151413731 17 : 66,810,997 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
31 rs2151413729 17 : 66,810,996 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
32 rs2151413726 17 : 66,810,983 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
33 rs2151413723 17 : 66,810,980 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
34 rs2151413720 17 : 66,810,977 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
35 rs2151413716 17 : 66,810,973 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
36 rs2151413713 17 : 66,810,973 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
37 rs2151413711 17 : 66,810,969 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
38 rs2151413709 17 : 66,810,965 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
39 rs2151413707 17 : 66,810,954 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
40 rs2151413705 17 : 66,810,953 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
41 rs2151413704 17 : 66,810,949 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
42 rs2151413701 17 : 66,810,945 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
43 rs2151413698 17 : 66,810,944 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
44 rs2151413696 17 : 66,810,941 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
45 rs2151413692 17 : 66,810,939 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
46 rs2151413691 17 : 66,810,931 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
47 rs2151413687 17 : 66,810,930 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
48 rs2151413683 17 : 66,810,927 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
49 rs2151413680 17 : 66,810,927 500B_downstream_variant, downstream_transcript_variant PRKCA n/a
50 rs2151413677 17 : 66,810,926 500B_downstream_variant, downstream_transcript_variant PRKCA Yes
{ "section": "SNP", "summary": "1 - 50 of 188071", "genes": [], "retstart": 0, "pageSize": 50, "count": 188071, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gaphttps.ncbi.nlm.nih.gov80gapphegenihttps://https.ncbi.nlm.nih.gov/gaphttps://https.ncbi.nlm.nih.govhttps://https.ncbi.nlm.nih.gov/gap/phegeni/gaphttps://https.ncbi.nlm.nih.gov/gap/phegeni/phegenitrueCE8A5EF3789ACB01_0726SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap1505578 CE8A5EF3789ACB01_0726SID12QYzJYPcDCcrNJAiWsUFgU4BiYN_lYX-PvVW9XmYrZQo@CE8A5EF3789ACB01_0726SID
1 - 46 of 46 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL103125592435643562228122634phs000342phs000363
41FHS_eGene_leadQTLs5052562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous303337023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum505523423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland404415923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta404424723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary505514123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial303336023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2450559723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia404413323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere606611423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum505513823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex303312723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9202211523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus303310223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus303310323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia505512423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia404410323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue303321923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes404413223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts303330523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid404417323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse505520723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction202217523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa202232923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis404428123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage505521723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle404424823715323phs000424.v6phs000424.v6
72GTEx_Liver505513823715323phs000424.v6phs000424.v6
73GTEx_Lung303333823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal202245423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial606633323715323phs000424.v6phs000424.v6
76GTEx_Ovary404410923715323phs000424.v6phs000424.v6
77GTEx_Pancreas505519423715323phs000424.v6phs000424.v6
78GTEx_Pituitary505512423715323phs000424.v6phs000424.v6
79GTEx_Prostate404412023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic303326923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg404438823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum404410523715323phs000424.v6phs000424.v6
83GTEx_Spleen404411923715323phs000424.v6phs000424.v6
84GTEx_Stomach202220223715323phs000424.v6phs000424.v6
85GTEx_Testis404419923715323phs000424.v6phs000424.v6
86GTEx_Thyroid404434723715323phs000424.v6phs000424.v6
87GTEx_Uterus40448923715323phs000424.v6phs000424.v6
88GTEx_Vagina50559823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood404443023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 46 of 46"}

Get information.dbGaP Studies

1 - 50 of 147 < Previous Next >  Page  GoDownload Modify Search
#
Disease
Study Type
Study Name
Participants
Platform
1 Alcoholism
Alcohol Dependence
Nicotine Dependence
Drug Dependence
Alcoholism
Case-Control Study of Addiction: Genetics and Environment (SAGE) 4121 Illumina: ILMN_Human-1
2 Alcoholism
Alcoholism
Case-Control CIDR: Collaborative Study on the Genetics of Alcoholism (COGA) 1945 Illumina: ILLUMINA_Human_1M
3 Diabetes Mellitus, Type 2
Diabetes Mellitus, Type 2
Nested Case-Control GENEVA Diabetes Study (NHS/HPFS) 6033 Affymetrix: AFFY_6.0
4 Diabetes Mellitus, Type 2
Diabetes Mellitus, Type 2
Case-Control Northwestern NUgene Project: Type 2 Diabetes 3563 Illumina: Human660W-Quad_v1_A
Illumina: Human1M-Duov3_B
5 Pancreatic Neoplasms
Pancreatic Neoplasms
Clinical Trial CALGB 80303: Genome-Wide Association Study of Advanced Pancreatic Cancer Patients 351 Illumina: HumanHap550v3.0
6 Cardiovascular Diseases
Lipoproteins
Personality
Behavior
Mental Health
Cardiovascular Diseases
Family, Population National Institute on Aging (NIA) SardiNIA Study Affymetrix: Mapping250K_Nsp
Affymetrix: Mapping250K_Sty
7 Osteoporosis
Osteoarthritis
Sleep
Osteoporosis
Cohort Osteoporotic Fractures in Men (MrOS) 5130 Illumina: HumanOmni1-Quad_v1-0_H
8 Metabolic Syndrome X
Coronary Artery Disease
Chronic Kidney Failure
Diabetes Mellitus, Type 2
Hypertension
Dyslipidemias
Metabolic Syndrome X
Case-Control IPM BioBank GWAS 2867 Affymetrix: AFFY_6.0
9 Alcoholism
Cocaine Dependence
Nicotine Dependence
Opiate Dependence
Alcoholism
Case-Control, Affected Sib Pairs Alcohol Dependence GWAS in European- and African Americans 2909 Illumina: HumanOmni1-Quad_v1-0_B
10 Autistic Disorder
Child Development Disorders, Pervasive
Autistic Disorder
Multiplex Families University of Miami Study on Genetics of Autism and Related Disorders (AutismDisorders) 1202
11 Autistic Disorder
Child Development Disorders, Pervasive
Autistic Disorder
Parent-Offspring Trios, Parent-Offspring Quads Sporadic Autism Exomes Reveal a Highly Interconnected Protein Network of De Novo Mutations 617 Roche NimbleGen: SeqCap EZ Human Exome Library v2.0
Roche NimbleGen: SeqCap EZ Human Exome Library v1.0
Illumina: Genome Analyzer IIX
Illumina: HiSeq 2000
12 Autistic Disorder
Heart Defects, Congenital
Asthma
Attention Deficit Disorders
Diabetes Mellitus, Type 1
Diabetes Mellitus, Type 2
Epilepsy
Gastrointestinal Diseases
Hypersensitivity
Autoimmune Diseases
Hematologic Diseases
Neoplasms
Arrhythmias, Cardiac
Chromosome Aberrations
Congenital Abnormalities
Dermatology
Developmental Disabilities
Endocrine System
Otolaryngology
Syndrome
Urogenital System
Hearing Loss
Immune System Diseases
Musculoskeletal Abnormalities
Nervous System Diseases
Neuromuscular Diseases
Metabolic Diseases
Nutrition Disorders
Vision Disorders
Mouth Diseases
Mental Disorders
Kidney Diseases
Respiration Disorders
Thyroid Diseases
Vascular Diseases
Non-Neoplastic Pediatric Disorder
Longitudinal, Prospective The Gene Partnership (TGP) - eMERGE Data 1024 Affymetrix: Axiom Genome-Wide EUR Array
13 Pancreatic Neoplasms
Carcinoma
Pancreatic Neoplasms
Case Set Characterization of Pancreatic Adenocarcinoma Patients Using NGS 4 Illumina: HiSeq 2000
Illumina: HiSeq 2000
14 Diabetes Mellitus, Type 2
Diabetes Mellitus, Type 2
Case-Control The Finland-United States Investigation of NIDDM Genetics (FUSION) - GWAS Study 1706 Illumina: HumanHap300v1.1
15 Cardiovascular Diseases
Diabetes Mellitus, Type 2
Obesity
Cholesterol, HDL
Cholesterol, LDL
Coronary Disease
Triglycerides
Myocardial Infarction
C-Reactive Protein
Gout
Uric Acid
Kidney Disease
Cardiovascular Diseases
Longitudinal Cohort, Longitudinal, Family PAGE: CALiCo: Strong Heart Study (SHS) Applied Biosystems: TaqMan OpenArrays: CALiCo AOD TaqMan Y1
Applied Biosystems: TaqMan OpenArrays: CALiCo ABD TaqMan Y1
Applied Biosystems: TaqMan OpenArrays: CALiCo DME TaqMan Y1
Applied Biosystems: TaqMan OpenArrays: CALiCo ABD TaqMan Y2
Applied Biosystems: TaqMan OpenArrays: CALiCo AOD TaqMan Y2
Applied Biosystems: TaqMan OpenArrays: CALiCo DME TaqMan Y2
Applied Biosystems: TaqMan OpenArrays: CALiCo Sequenom Y2
16 Metabolic Syndrome X
Diabetes Mellitus, Type 2
Obesity
Metabolic Syndrome X
Case-Control Asian Indian Diabetic Heart Study (AIDHS) 1616 Illumina: Human660W-Quad_v1_A
17 Cardiovascular Diseases
Type 2 Diabetes Mellitus
Obesity
Cholesterol, HDL
Cholesterol, LDL
Coronary Disease
Triglycerides
Myocardial Infarction
C-Reactive Protein
Gout
Uric Acid
Kidney
Stroke
Hypertension
Respiratory Tract Diseases
Cardiovascular Diseases
Longitudinal PAGE: CALiCo: Coronary Artery Risk Development in Young Adults(CARDIA) 3595 Applied Biosystems: TaqMan OpenArrays: CALiCo ABD TaqMan Y1
Applied Biosystems: TaqMan OpenArrays: CALiCo ABD TaqMan Y2
Applied Biosystems: TaqMan OpenArrays: CALiCo AOD TaqMan Y1
Applied Biosystems: TaqMan OpenArrays: CALiCo AOD TaqMan Y2
Applied Biosystems: TaqMan OpenArrays: CALiCo DME TaqMan Y1
Applied Biosystems: TaqMan OpenArrays: CALiCo DME TaqMan Y2
Applied Biosystems: TaqMan OpenArrays: CALiCo Sequenom Y2
Illumina: iSelect Custom Panel
18 Cohort, Case-Control 27995 Applied Biosystems: TaqMan OpenArrays
Applied Biosystems: TaqMan OpenArrays: MEC_HI_SNPASSAYONLY_04-14-10
Applied Biosystems: TaqMan OpenArrays: MEC_HI_SNPASSAYONLY_09-18-11
Applied Biosystems: TaqMan OpenArrays: MEC_HI_SNPASSAYONLY_12-7-09
Applied Biosystems: TaqMan OpenArrays: MEC_LA_SNPASSAYONLY_12-7-09
Applied Biosystems: TaqMan OpenArrays: MEC_SNPASSAYONLY_09-15-11
Illumina: iSelect Custom Panel
19 Aging
Neoplasms
Arthritis
Lung Diseases, Obstructive
Dementia
Heart Diseases
Heart Failure
Hypertension
Myocardial Infarction
Diabetes Mellitus
Hypercholesterolemia
Obesity
Body Weight
Mobility Limitation
Pain
Cholesterol
Hemoglobin A, Glycosylated
C-Reactive Protein
Cystatin C
Depression
Alcohol Drinking
Smoking
Personality
Life Style
Cognition
Demography
Ethnic Groups
Health Status
Population Groups
Housing
Independent Living
Socioeconomic Factors
Career Mobility
Educational Status
Employment
Family Characteristics
Income
Occupations
Poverty
Social Change
Social Class
Social Conditions
Risk Factors
Aging
Longitudinal Health and Retirement Study (HRS) 15620 Illumina: HumanOmni2.5
20 Diabetes Mellitus, Type 2
Diabetes Mellitus, Type 2
Case-Control SIGMA Type 2 Diabetes Consortium Illumina: HumanOmni2.5-4v1_H
21 Diabetes Mellitus, Type 2
Diabetes Mellitus, Type 2
Case-Control Sequence Data From Participants in the FUSION Study 1825 Illumina: HiSeq 2000
Illumina: Genome Analyzer IIX
Agilent: Custom
22 Cardiovascular Diseases
Personality
Lipid Metabolism
Behavior and Behavior Mechanisms
Cardiovascular Diseases
Family, Population SardiNIA Medical Sequencing Discovery Project 2105 Illumina: Genome Analyzer IIX
Illumina: HiSeq 2000
23 Metabolic Syndrome X
Diabetes mellitus type 2
Hypertension, Essential
Dyslipidemia
Coronary Heart Disease
Gout
Metabolic Syndrome X
Cross-Sectional, Family NIDDK Genetics of Metabolic Syndrome in an Island Population 1405 Affymetrix: GenomeWideSNP_5
24 Alcoholism
Alcoholism
Family The Collaborative Study on the Genetics of Alcoholism (COGA) 3557 Illumina: HumanOmniExpress-12v1_C
Illumina: OmniExpress 1M Duo
1000 Genomes Project: 1000 Genomes
25 Population Genetics
Type 2 Diabetes Mellitus
Insulin
Glucose
Obesity
Anthropometry
Body Mass Index
Bone Density
Cholesterol, HDL
Cholesterol, LDL
Triglycerides
Kidney Function Tests
Uric Acid
Gout
Pancreatitis
Macular Degeneration
Hypertension
Blood Pressure
Menopause
Menarche
Alcohol Drinking
Smoking
Caffeine
Red Blood Cell Count
C Reactive Protein
White Blood Cell Count
Platelets
Coronary Disease
Myocardial Infarction
Electrocardiography
Asthma
Neoplasms
Population Genetics
Cross-Sectional, Longitudinal, Nested Case-Control Population Architecture using Genomics and Epidemiology (PAGE)
26 Body Height
Body Weight
Age Distribution
Sex
Birth place
Race
Cotinine
Creatinine
Leukocyte count
Erythrocyte Count
Hemoglobins
hematocrit
Mean corpuscular volume
Mean corpuscular hemoglobin
Mean Corpuscular Hemoglobin Concentration
Platelet count
Aspartate aminotransferase
Alanine Transaminase
Gamma-glutamyltransferase
Bilirubin
Urea
Uric Acid
Ferritins
Vitamin B 12
Holo transcobalamin II
Transcobalamin II
Homocysteine
Methylmalonic acid
Cysteine
Methionine
Serine
Glycine
Cystathionine
Sarcosine
Arginine
Tryptophan
Kynurenine
3-Hydroxykynurenine
Kynurenic acid
Xanthurenic acid
Anthranilic acids
3-Hydroxyanthranilic acid
Neopterin
Choline
Betaine
Dimethylglycine
Pyridoxal phosphate
Pyridoxal
Pyridoxic acid
Riboflavin
Flavin mononucleotide
Flavin-Adenine Dinucleotide
Control Set Collaborative Study of Genes, Nutrients and Metabolites (CSGNM) 2408 Illumina: HumanOmni1-Quad_v1-0_B
27 Diabetes Mellitus, Type 2
Obesity
Heart Diseases
Kidney Diseases
Diabetes Mellitus, Type 2
Family, Mixed, Longitudinal T2D-GENES Project 2: San Antonio Mexican American Family Studies (SAMAFS), Substudy 2: Whole genome sequencing in pedigrees 1048 Complete Genomics: Assembler Version 1.11; File Format Version: 1.6
Illumina: HumanHap550v3.0
Illumina: HumanExon510-Sv1 DNA Analysis BeadChip (HumanExon510Sv1_D)
Illumina: Human660W-Quad_v1_A
Illumina: Human 1M v1
Illumina: Human1M-Duov3_B
Illumina: HumanExome-12 v1.1 BeadChip
Illumina: Sentrix Human-6 Expression BeadChip
28 Stress Disorders, Post-Traumatic
Stress Disorders, Post-Traumatic
Longitudinal Cohort, Prospective, Cross-Sectional Genomic Predictors of Combat Stress Vulnerability and Resilience 3992 Illumina: HumanOmniExpressExome-8v1_A
Illumina: HumanOmniExpressExome-8v1_B
29 Diabetes Mellitus, Type 2
Diabetes Mellitus, Type 2
Case-Control The Finland-United States Investigation of NIDDM Genetics (FUSION) Study 1850
30 NA
Angiotensin-Converting Enzyme Inhibitors
Aortic Aneurysm, Abdominal
Appendicitis
Asthma
Attention Deficit Disorder with Hyperactivity
Autistic Disorder
Body Height
Cardiovascular Diseases
Carotid Artery Diseases
Cataract
Clostridium difficile
Colonic Polyps
Dementia
Dermatitis, Atopic
Diabetes Mellitus, Type 2
Diabetic Retinopathy
Diverticulitis
Erythrocyte Count
Eye Diseases
Gastric Bypass
Gastroesophageal Reflux
Gastrointestinal Diseases
Glaucoma
Herpes Zoster
Hypertension
Hypothyroidism
Intestinal Polyps
Kidney Diseases
Leukocyte count
Lipids
Macular Degeneration
Male Urogenital Diseases
Mental Disorders
Methicillin-Resistant Staphylococcus aureus
Obesity, Morbid
Ocular Hypertension
Pediatric Obesity
Peripheral Arterial Disease
Physical Fitness
Prostatic Hyperplasia
Respiratory Tract Diseases
Skin Diseases
NA
Case-Control, Cohort eMERGE Network Imputed GWAS for 41 phenotypes 55029 1000 Genomes Project: 1000 Genomes
31 Obesity
Diabetes Mellitus, Type 2
Obesity
Cohort, Cross-Sectional, Longitudinal CIP: Obesity-Diabetes Familial Risk 935 Illumina: HumanOmni1-Quad_v1-0_B
Illumina: HumanOmni2.5
Illumina: HiSeq 2000
Roche NimbleGen: VCRome 2.1 (HGSC design)
32 Cardiovascular Diseases
Obesity
Diabetes Mellitus, Type 2
Glucose
Kidney Failure, Chronic
Cholesterol, HDL
Cholesterol, LDL
Triglycerides
Coronary Disease
Myocardial Infarction
Inflammation
Stroke
Body Height
Cardiovascular Diseases
Longitudinal Cohort PAGE: IPM BioMe Biobank 13067 Illumina: HiSeq X
Illumina: MEGA_Consortium_15063755_B2
33 Neoplasms
Breast Neoplasms
Adenocarcinoma of lung
Lung Neoplasms
Prostatic Neoplasms
Ovarian Neoplasms
Pancreatic Neoplasms
Meningioma
Cholangiocarcinoma
Carcinoma, Non-Small-Cell Lung
Carcinoma, Merkel Cell
Sarcoma
Osteosarcoma
Adrenocortical Carcinoma
Hodgkin Disease
Rhabdomyosarcoma
Neoplasms
Cohort The Landscape of Antisense Gene Expression in Human Cancers 376 Illumina: HiSeq 2000
34 Neoplasms
Breast Neoplasms
Ovarian Neoplasms
Peritoneal Neoplasms
Skin Neoplasms
Esophageal Neoplasms
Thyroid Neoplasms
Urinary Bladder Neoplasms
Endometrial Neoplasms
Fallopian Tube Neoplasms
Melanoma
Testicular Neoplasms
Bile Duct Neoplasms
Lung Neoplasms
Colonic Neoplasms
Adrenocortical Carcinoma
Carcinoma, Renal Cell
Colonic Polyps
Adenomatous Polyposis Coli
Lymphoma, Large B-Cell, Diffuse
Pheochromocytoma
Paraganglioma
Leiomyoma
Hemangioblastoma
Hyperparathyroidism
Pancreatic Neoplasms
Vulvar Neoplasms
Brain Neoplasms
Liver Neoplasms
Kidney Neoplasms
Prostatic Neoplasms
Glioblastoma
Oncocytoma, renal
Neoplasms
Cohort Use of WGS for Diagnosis and Discovery in the Cancer Genetics Clinic 258 Complete Genomics: Assembler Version 2.4.0.43
35 Pancreatic Neoplasms
Pancreatic Neoplasms
Longitudinal Cohort Microdissected Pancreatic Cancer Whole Exome Sequencing 109 Complete Genomics: Assembler Version 1.2.0; File Format Version: July 2009
36 Osteoarthritis
osteoarthritis
Longitudinal Genetic Components of Knee Osteoarthritis (GeCKO) Study: OAI 4129 Illumina: HumanOmni2.5-4v1_B
37 NA
Renal Insufficiency, Chronic
Alzheimer Disease
Aortic Aneurysm, Abdominal
Asthma
Attention Deficit Disorder with Hyperactivity
Clostridium difficile
Dermatitis, Atopic
Diabetes Mellitus, Type 2
Heart Diseases
Herpes Zoster
Hypothyroidism
Methicillin-Resistant Staphylococcus aureus
Prostatic Hyperplasia
NA
Case-Control, Prospective, Cohort eMERGE III: Columbia GENIE (Genomic Integration with EHR) 3065 Affymetrix: AFFY_6.0
Illumina: Mega Consortium - 15063755
38 Diabetes Mellitus, Type 2
Diabetes Mellitus, Type 2
Case Set Pharmacogenomics of Metformin Dose Response in T2DM Patients 202 Illumina: HumanOmniExpressExome BeadChip
39 Cardiovascular Diseases
Vascular Calcification
Diabetes Mellitus
Cardiovascular Diseases
Cross-Sectional, Cohort The Diabetes Heart Study (DHS) 1177 Affymetrix: GenomeWideSNP_5
40 Diabetes Mellitus, Type 2
Diabetes Mellitus, Type 2
Case-Control T2D-GENES Multi-Ethnic Exome Sequencing Study: UK South Asian 1068 Agilent: SureSelect Human All Exon v2 - 44Mb
41 Diabetes Mellitus, Type 2
Diabetes Mellitus, Type 2
Case-Control T2D-GENES Multi-Ethnic Exome Sequencing Study: Ashkenazi 858 Agilent: SureSelect Human All Exon v2 - 44Mb
42 Diabetes Mellitus, Type 2
Diabetes Mellitus, Type 2
Case-Control T2D-GENES Multi-Ethnic Exome Sequencing Study: KARE 1087 Agilent: SureSelect Human All Exon v2 - 44Mb
43 Diabetes Mellitus, Type 2
Diabetes Mellitus, Type 2
Case-Control T2D-GENES Multi-Ethnic Exome Sequencing Study: Singapore 2226 Agilent: SureSelect Human All Exon v2 - 44Mb
44 Diabetes Mellitus, Type 2
Diabetes Mellitus, Type 2
Case-Control T2D-GENES Multi-Ethnic Exome Sequencing Study: Starr County 1474 Agilent: SureSelect Human All Exon v2 - 44Mb
45 Diabetes Mellitus, Type 2
Diabetes Complications
Diabetes Mellitus, Type 2
Cohort, Family NIDDM-Atherosclerosis Study (NIDDM-Athero) 247 Illumina: HumanOmniExpress-12v1_H
Illumina: HumanOmni1S-8v1_H
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