Search Summary
Search Criteria
Genotype Selection - Genes
6340
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Search Results
Association Results | No data found. | Searched by gene IDs retrieved from gene search. |
Genes | 1 - 1 of 1 | Searched by gene names and/or gene IDs. |
SNPs | 1 - 50 of 14701 | Searched by gene symbols retrieved from gene search. |
eQTL Data | 1 - 41 of 41 | Searched by gene IDs retrieved from gene search. |
dbGaP Studies | Retrieving... | Searched by traits retrieved from page 1 of association results. |
Genome View | Retrieving... |
Search Criteria
Select broad trait category to limit the items shown in the trait selection.
Select trait for search. Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser. This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.
Celiac Disease
Gene Search: CDKAL1
Location: MHC region
Genes
# | Symbol | Description | Location | OMIM | ||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | SCNN1G | sodium channel epithelial 1 subunit gamma | 16 | : 23,182,745 - 23,216,883 | 600761 | |||||
| ||||||||||
Association Results
No association data found.
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{
"section": "assoc",
"summary": "No data found.",
"mesh": [
],
"genes": [],
"snps": [],
"page": 1,
"call": "BuildGaP",
"pageSize": 50,
"recCount": 0
}
SNPs
# | rs# | Location | Function Class | Gene | Diversity | |
---|---|---|---|---|---|---|
1 | rs2141947907 | 16 | : 23,217,355 | downstream_transcript_variant, 500B_downstream_variant | SCNN1G | n/a |
2 | rs2141947905 | 16 | : 23,217,354 | downstream_transcript_variant, 500B_downstream_variant | SCNN1G | n/a |
3 | rs2141947873 | 16 | : 23,217,306 | downstream_transcript_variant, 500B_downstream_variant | SCNN1G | Yes |
4 | rs2141947848 | 16 | : 23,217,277 | downstream_transcript_variant, 500B_downstream_variant | SCNN1G | n/a |
5 | rs2141947782 | 16 | : 23,217,199 | downstream_transcript_variant, 500B_downstream_variant | SCNN1G | Yes |
6 | rs2141947731 | 16 | : 23,217,117 | downstream_transcript_variant, 500B_downstream_variant | SCNN1G | n/a |
7 | rs2141947701 | 16 | : 23,217,036 | downstream_transcript_variant, 500B_downstream_variant | SCNN1G | n/a |
8 | rs2141947687 | 16 | : 23,217,027 | downstream_transcript_variant, 500B_downstream_variant | SCNN1G | Yes |
9 | rs2141947626 | 16 | : 23,216,942 | downstream_transcript_variant, 500B_downstream_variant | SCNN1G | n/a |
10 | rs2141947623 | 16 | : 23,216,932 | downstream_transcript_variant, 500B_downstream_variant | SCNN1G | n/a |
11 | rs2141947575 | 16 | : 23,216,823 | 3_prime_UTR_variant | SCNN1G | Yes |
12 | rs2141947549 | 16 | : 23,216,718 | 3_prime_UTR_variant | SCNN1G | n/a |
13 | rs2141947509 | 16 | : 23,216,625 | 3_prime_UTR_variant | SCNN1G | n/a |
14 | rs2141947494 | 16 | : 23,216,613 | 3_prime_UTR_variant | SCNN1G | Yes |
15 | rs2141947439 | 16 | : 23,216,516 | 3_prime_UTR_variant | SCNN1G | Yes |
16 | rs2141947386 | 16 | : 23,216,409 | 3_prime_UTR_variant | SCNN1G | n/a |
17 | rs2141947384 | 16 | : 23,216,401 | 3_prime_UTR_variant | SCNN1G | Yes |
18 | rs2141947381 | 16 | : 23,216,400 | 3_prime_UTR_variant | SCNN1G | Yes |
19 | rs2141947376 | 16 | : 23,216,399 | 3_prime_UTR_variant | SCNN1G | n/a |
20 | rs2141947353 | 16 | : 23,216,364 | 3_prime_UTR_variant | SCNN1G | n/a |
21 | rs2141947337 | 16 | : 23,216,305 | 3_prime_UTR_variant | SCNN1G | n/a |
22 | rs2141947286 | 16 | : 23,216,229 | 3_prime_UTR_variant | SCNN1G | Yes |
23 | rs2141947260 | 16 | : 23,216,172 | 3_prime_UTR_variant | SCNN1G | n/a |
24 | rs2141947257 | 16 | : 23,216,167 | 3_prime_UTR_variant | SCNN1G | n/a |
25 | rs2141947253 | 16 | : 23,216,151 | 3_prime_UTR_variant | SCNN1G | n/a |
26 | rs2141947252 | 16 | : 23,216,146 | 3_prime_UTR_variant | SCNN1G | Yes |
27 | rs2141947182 | 16 | : 23,216,066 | 3_prime_UTR_variant | SCNN1G | n/a |
28 | rs2141947126 | 16 | : 23,215,994 | 3_prime_UTR_variant | SCNN1G | n/a |
29 | rs2141946923 | 16 | : 23,215,626 | 3_prime_UTR_variant | SCNN1G | n/a |
30 | rs2141946912 | 16 | : 23,215,586 | 3_prime_UTR_variant | SCNN1G | n/a |
31 | rs2141946891 | 16 | : 23,215,555 | 3_prime_UTR_variant | SCNN1G | Yes |
32 | rs2141946779 | 16 | : 23,215,398 | missense_variant, coding_sequence_variant | SCNN1G | n/a |
33 | rs2141946672 | 16 | : 23,215,287 | missense_variant, coding_sequence_variant | SCNN1G | Yes |
34 | rs2141946607 | 16 | : 23,215,218 | coding_sequence_variant, stop_gained | SCNN1G | n/a |
35 | rs2141946567 | 16 | : 23,215,184 | synonymous_variant, coding_sequence_variant | SCNN1G | n/a |
36 | rs2141946564 | 16 | : 23,215,173 | missense_variant, coding_sequence_variant | SCNN1G | n/a |
37 | rs2141946421 | 16 | : 23,214,983 | intron_variant | SCNN1G | n/a |
38 | rs2141946369 | 16 | : 23,214,911 | intron_variant | SCNN1G | Yes |
39 | rs2141946358 | 16 | : 23,214,898 | intron_variant | SCNN1G | n/a |
40 | rs2141946357 | 16 | : 23,214,896 | intron_variant | SCNN1G | Yes |
41 | rs2141946351 | 16 | : 23,214,861 | intron_variant | SCNN1G | Yes |
42 | rs2141946256 | 16 | : 23,214,716 | missense_variant, coding_sequence_variant | SCNN1G | Yes |
43 | rs2141946233 | 16 | : 23,214,685 | intron_variant | SCNN1G | n/a |
44 | rs2141946205 | 16 | : 23,214,637 | intron_variant | SCNN1G | n/a |
45 | rs2141946172 | 16 | : 23,214,568 | intron_variant | SCNN1G | n/a |
46 | rs2141946123 | 16 | : 23,214,497 | intron_variant | SCNN1G | Yes |
47 | rs2141946025 | 16 | : 23,214,347 | intron_variant | SCNN1G | n/a |
48 | rs2141945978 | 16 | : 23,214,263 | intron_variant | SCNN1G | Yes |
49 | rs2141945940 | 16 | : 23,214,190 | intron_variant | SCNN1G | Yes |
50 | rs2141945882 | 16 | : 23,214,084 | intron_variant | SCNN1G | Yes |
eQTL Data
1 - 41 of 41
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{ "section": "eqtl", "summary": "1 - 41 of 41"}