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Genotype Selection - Genes

6742
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Association Results 1 - 2 of 2 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 5733 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 47 of 47 Searched by gene IDs retrieved from gene search.
dbGaP Studies  Retrieving... Searched by traits retrieved from association results.
Genome View  Retrieving... 
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Get information.

Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
SSBP1single stranded DNA binding protein 1 7 : 141,738,321 - 141,750,488600439
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["7", 141738321, 141750488] ], "markers": { "7": [ ["SSBP1", "NC_000007.14", 141738321, 141750488, "single stranded DNA binding protein 1", "Mt-SSB, OPA13, SOSS-B1, SSBP, mtSSB", 6742] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Hemoglobin A, Glycosylated rs10485836 intron SSBP1 7 : 141,748,896 9.720 x 10-8 dbGaP phs000342 European 17903298
2 Hemoglobin A, Glycosylated rs10485836 intron SSBP1 7 : 141,748,896 4.904 x 10-7 dbGaP phs000342 European 17903298
{ "section": "assoc", "summary": "1 - 2 of 2", "mesh": [ "Hemoglobin A, Glycosylated" ], "genes": [6742], "snps": [10485836], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 2 }

Get information.SNPs

1 - 50 of 5733 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2117200963 7 : 141,750,965 500B_downstream_variant, downstream_transcript_variant SSBP1 Yes
2 rs2117200787 7 : 141,750,813 500B_downstream_variant, downstream_transcript_variant SSBP1 Yes
3 rs2117200647 7 : 141,750,731 500B_downstream_variant, downstream_transcript_variant SSBP1 n/a
4 rs2117200523 7 : 141,750,677 500B_downstream_variant, downstream_transcript_variant SSBP1 n/a
5 rs2117200311 7 : 141,750,566 500B_downstream_variant, downstream_transcript_variant SSBP1 n/a
6 rs2117200139 7 : 141,750,470 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant SSBP1 n/a
7 rs2117200135 7 : 141,750,469 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant SSBP1 n/a
8 rs2117200128 7 : 141,750,468 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant SSBP1 Yes
9 rs2117200113 7 : 141,750,462 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant SSBP1 n/a
10 rs2117200090 7 : 141,750,450 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant SSBP1 Yes
11 rs2117199904 7 : 141,750,372 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant SSBP1 n/a
12 rs2117199900 7 : 141,750,370 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant SSBP1 n/a
13 rs2117199564 7 : 141,750,219 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
14 rs2117199523 7 : 141,750,185 intron_variant, genic_downstream_transcript_variant SSBP1 Yes
15 rs2117199418 7 : 141,750,142 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
16 rs2117199326 7 : 141,750,077 intron_variant, genic_downstream_transcript_variant SSBP1 Yes
17 rs2117199258 7 : 141,750,052 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
18 rs2117199121 7 : 141,749,952 intron_variant, genic_downstream_transcript_variant SSBP1 Yes
19 rs2117199101 7 : 141,749,941 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
20 rs2117199071 7 : 141,749,919 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
21 rs2117198697 7 : 141,749,736 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
22 rs2117198312 7 : 141,749,519 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
23 rs2117198263 7 : 141,749,501 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
24 rs2117198072 7 : 141,749,365 intron_variant, genic_downstream_transcript_variant SSBP1 Yes
25 rs2117197983 7 : 141,749,297 intron_variant, genic_downstream_transcript_variant SSBP1 Yes
26 rs2117197826 7 : 141,749,224 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
27 rs2117197551 7 : 141,749,091 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
28 rs2117197374 7 : 141,748,981 intron_variant, genic_downstream_transcript_variant SSBP1 Yes
29 rs2117197224 7 : 141,748,923 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
30 rs2117197205 7 : 141,748,917 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
31 rs2117197028 7 : 141,748,845 intron_variant, genic_downstream_transcript_variant SSBP1 Yes
32 rs2117197021 7 : 141,748,840 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
33 rs2117196862 7 : 141,748,741 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
34 rs2117196671 7 : 141,748,650 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
35 rs2117196653 7 : 141,748,629 intron_variant, genic_downstream_transcript_variant SSBP1 Yes
36 rs2117196441 7 : 141,748,531 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
37 rs2117196244 7 : 141,748,445 intron_variant, genic_downstream_transcript_variant SSBP1 Yes
38 rs2117195745 7 : 141,748,209 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
39 rs2117195646 7 : 141,748,175 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
40 rs2117195250 7 : 141,748,014 intron_variant, genic_downstream_transcript_variant SSBP1 Yes
41 rs2117195113 7 : 141,747,985 intron_variant, genic_downstream_transcript_variant SSBP1 n/a
42 rs2117194970 7 : 141,747,917 intron_variant, genic_downstream_transcript_variant SSBP1 Yes
43 rs2117194918 7 : 141,747,882 intron_variant, genic_downstream_transcript_variant SSBP1 Yes
44 rs2117194581 7 : 141,747,750 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant SSBP1 Yes
45 rs2117194538 7 : 141,747,734 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant SSBP1 n/a
46 rs2117194298 7 : 141,747,645 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant SSBP1 Yes
47 rs2117194232 7 : 141,747,618 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant SSBP1 Yes
48 rs2117194177 7 : 141,747,599 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant SSBP1 Yes
49 rs2117193788 7 : 141,747,463 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant SSBP1 Yes
50 rs2117193654 7 : 141,747,408 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant SSBP1 Yes
{ "section": "SNP", "summary": "1 - 50 of 5733", "genes": [], "retstart": 0, "pageSize": 50, "count": 5733, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gaphttps.ncbi.nlm.nih.gov80gapphegenihttps://https.ncbi.nlm.nih.gov/gaphttps://https.ncbi.nlm.nih.govhttps://https.ncbi.nlm.nih.gov/gap/phegeni/gaphttps://https.ncbi.nlm.nih.gov/gap/phegeni/phegenitrueCE8DC58C792BFC41_0101SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap1506742 CE8DC58C792BFC41_0101SID1Zqsr8@CE8DC58C792BFC41_0101SID
1 - 47 of 47 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
1Population genomics of human gene expression604245-21017873874HapMap_v21GSE6536
40FHS_eQTL8145946518562228122634phs000342phs000363
41FHS_eGene_leadQTLs1011562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous303337023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial202236023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2420229723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia202213323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex202212723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9202211523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes202213223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa202232923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal202245423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic403426923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg303338823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen202211923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis202219923715323phs000424.v6phs000424.v6
86GTEx_Thyroid303334723715323phs000424.v6phs000424.v6
87GTEx_Uterus20228923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 47 of 47"}
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