Search Summary
Search Criteria
Genotype Selection - Genes
85300
Modify Search
Search Results
Association Results | 1 - 1 of 1 | Searched by gene IDs retrieved from gene search. |
Genes | 1 - 1 of 1 | Searched by gene names and/or gene IDs. |
SNPs | 1 - 50 of 21884 | Searched by gene symbols retrieved from gene search. |
eQTL Data | 1 - 42 of 42 | Searched by gene IDs retrieved from gene search. |
dbGaP Studies | 1 - 26 of 26 | Searched by traits retrieved from association results. |
Genome View | Retrieving... |
Search Criteria
Select broad trait category to limit the items shown in the trait selection.
Select trait for search. Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser. This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.
Celiac Disease
Gene Search: CDKAL1
Location: MHC region
Genes
# | Symbol | Description | Location | OMIM | ||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | ATCAY | ATCAY kinesin light chain interacting caytaxin | 19 | : 3,880,685 - 3,928,082 | 608179 | |||||
| ||||||||||
Association Results
# |
Trait |
rs # |
Context |
Gene |
Location |
P-value |
Source |
Study |
Population | PubMed |
|
---|---|---|---|---|---|---|---|---|---|---|---|
1 | Aging | rs10412199 | UTR-3 | ATCAY | 19 | : 3,927,773 | 3.000 x 10-6 | NHGRI | European | 21782286 |
SNPs
# | rs# | Location | Function Class | Gene | Diversity | |
---|---|---|---|---|---|---|
1 | rs2145351526 | 19 | : 3,928,582 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
2 | rs2145351516 | 19 | : 3,928,575 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
3 | rs2145351515 | 19 | : 3,928,563 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
4 | rs2145351512 | 19 | : 3,928,556 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
5 | rs2145351505 | 19 | : 3,928,549 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
6 | rs2145351499 | 19 | : 3,928,548 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
7 | rs2145351497 | 19 | : 3,928,538 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
8 | rs2145351494 | 19 | : 3,928,530 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
9 | rs2145351487 | 19 | : 3,928,529 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
10 | rs2145351482 | 19 | : 3,928,516 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
11 | rs2145351476 | 19 | : 3,928,514 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
12 | rs2145351467 | 19 | : 3,928,513 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
13 | rs2145351460 | 19 | : 3,928,497 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
14 | rs2145351458 | 19 | : 3,928,484 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
15 | rs2145351453 | 19 | : 3,928,480 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
16 | rs2145351447 | 19 | : 3,928,479 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
17 | rs2145351443 | 19 | : 3,928,479 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
18 | rs2145351439 | 19 | : 3,928,478 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
19 | rs2145351433 | 19 | : 3,928,453 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
20 | rs2145351428 | 19 | : 3,928,450 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
21 | rs2145351426 | 19 | : 3,928,449 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
22 | rs2145351420 | 19 | : 3,928,447 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
23 | rs2145351416 | 19 | : 3,928,441 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
24 | rs2145351414 | 19 | : 3,928,423 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
25 | rs2145351410 | 19 | : 3,928,415 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
26 | rs2145351404 | 19 | : 3,928,410 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
27 | rs2145351400 | 19 | : 3,928,402 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
28 | rs2145351394 | 19 | : 3,928,403 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
29 | rs2145351386 | 19 | : 3,928,397 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
30 | rs2145351381 | 19 | : 3,928,395 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
31 | rs2145351379 | 19 | : 3,928,394 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
32 | rs2145351375 | 19 | : 3,928,390 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
33 | rs2145351371 | 19 | : 3,928,385 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
34 | rs2145351351 | 19 | : 3,928,376 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
35 | rs2145351328 | 19 | : 3,928,372 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
36 | rs2145351319 | 19 | : 3,928,370 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
37 | rs2145351316 | 19 | : 3,928,355 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
38 | rs2145351307 | 19 | : 3,928,354 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
39 | rs2145351302 | 19 | : 3,928,347 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
40 | rs2145351297 | 19 | : 3,928,345 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
41 | rs2145351293 | 19 | : 3,928,322 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
42 | rs2145351288 | 19 | : 3,928,321 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
43 | rs2145351283 | 19 | : 3,928,319 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
44 | rs2145351274 | 19 | : 3,928,301 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
45 | rs2145351269 | 19 | : 3,928,270 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
46 | rs2145351261 | 19 | : 3,928,269 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | n/a |
47 | rs2145351255 | 19 | : 3,928,268 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
48 | rs2145351250 | 19 | : 3,928,266 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
49 | rs2145351245 | 19 | : 3,928,265 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
50 | rs2145351241 | 19 | : 3,928,258 | 500B_downstream_variant, downstream_transcript_variant | ATCAY | Yes |
eQTL Data
1 - 42 of 42
Modify Search
{ "section": "eqtl", "summary": "1 - 42 of 42"}
dbGaP Studies
# |
Disease |
Study Type |
Study Name |
Participants |
Platform |
---|---|---|---|---|---|
1 | Growth and Development Aging Aging |
Control Set | BrainCloud: Data from Human Postmortem Brain Across the Lifespan | 270 | Illumina: HumanHap650Yv3.0 Illumina: Human1M-Duov3_B |
2 | Aging Longevity Centenarian Centenarian |
Case Set | NHLBI and NIA The New England Centenarian Study (NECS) | 2 | Illumina: Genome Analyzer II |
3 | Aging Neoplasms Arthritis Lung Diseases, Obstructive Dementia Heart Diseases Heart Failure Hypertension Myocardial Infarction Diabetes Mellitus Hypercholesterolemia Obesity Body Weight Mobility Limitation Pain Cholesterol Hemoglobin A, Glycosylated C-Reactive Protein Cystatin C Depression Alcohol Drinking Smoking Personality Life Style Cognition Demography Ethnic Groups Health Status Population Groups Housing Independent Living Socioeconomic Factors Career Mobility Educational Status Employment Family Characteristics Income Occupations Poverty Social Change Social Class Social Conditions Risk Factors Aging |
Longitudinal | Health and Retirement Study (HRS) | 15620 | Illumina: HumanOmni2.5 |
4 | Aging Aging |
Cohort | Immunosenescence: Immunity in the Young and Aged | 9 | Illumina: MiSeq |
5 | Dementia Alzheimer Disease Aging Aged Age Factors Dementia |
Case-Control | Group Health/UW Aging and Dementia eMERGE Study | 3756 | Illumina: Human660W-Quad_v1_A |
6 | Aging Antigens, Differentiation, T-Lymphocyte T-Lymphocytes Aging |
Case-Control | Epigenomics of Human CD8 T cell Differentiation and Aging | 23 | Illumina: HiSeq 2500 Illumina: HiSeq 2500 |
7 | Aging Anemia, Iron-Deficiency Anxiety Disorders Asthma Bacterial Infections and Mycoses Cardiovascular Diseases Depressive Disorder Dermatomycoses Diabetes Mellitus, Type 2 Digestive System Diseases Dyslipidemias Eye Diseases Hemic and Lymphatic Diseases Hemorrhoids Hernia, Abdominal Hypertension Irritable Bowel Syndrome Macular Degeneration Mental Disorders Mood Disorders Musculoskeletal Diseases Neoplasms Osteoarthritis Osteoporosis Pathological Conditions, Signs and Symptoms Peptic Ulcer Peripheral Vascular Diseases Respiratory Tract Diseases Rhinitis Sleep Disorders Sleep Initiation and Maintenance Disorders Stress Disorders, Traumatic, Acute Varicose Veins Vascular Diseases Aging |
Cohort | Resource for Genetic Epidemiology Research on Aging (GERA) | 78419 | Affymetrix: Axiom_KP_UCSF_AFR Affymetrix: Axiom_KP_UCSF_EAS Affymetrix: Axiom_KP_UCSF_EUR Affymetrix: Axiom_KP_UCSF_LAT |
8 | Aging Anemia, Iron-Deficiency Anxiety Disorders Asthma Bacterial Infections and Mycoses Cardiovascular Diseases Depressive Disorder Dermatomycoses Diabetes Mellitus, Type 2 Digestive System Diseases Dyslipidemias Eye Diseases Hemic and Lymphatic Diseases Hemorrhoids Hernia, Abdominal Hypertension Irritable Bowel Syndrome Macular Degeneration Mental Disorders Mood Disorders Musculoskeletal Diseases Neoplasms Osteoarthritis Osteoporosis Pathological Conditions, Signs and Symptoms Peptic Ulcer Peripheral Vascular Diseases Respiratory Tract Diseases Rhinitis Sleep Disorders Sleep Initiation and Maintenance Disorders Stress Disorders, Traumatic, Acute Varicose Veins Vascular Diseases Aging |
Cohort | Research Program on Genes, Environment and Health (RPGEH) | 78423 | |
9 | Coronary Artery Disease Cholesterol Insulin Blood Glucose Type 2 Diabetes C-Reactive Protein Blood Pressure Aging Smoking Body Mass Index Coronary Artery Disease |
Case-Control | NHLBI's BA23 in WHI | 2129 | Illumina: Infinium HumanMethylation450 BeadChip Applied Biosystems: TaqMan OpenArrays |
10 | Hypertension Aging Arterial Pressure Arteriosclerosis Atherosclerosis Biomarkers Blood Pressure Cardiovascular Diseases Cholesterol Cholesterol, HDL Cholesterol, LDL Coronary Artery Disease Diabetes Mellitus Echocardiography Endophenotypes Hyperglycemia Hyperinsulinism Hypertrophy, Left Ventricular Inflammation Kidney Failure, Chronic Leukoaraiosis Lipids Obesity Obesity, Abdominal Peripheral Arterial Disease Renal Insufficiency, Chronic Triglycerides Vascular Calcification Hypertension |
Sibling Cohort | Genetic Epidemiology Network of Arteriopathy (GENOA) | 3462 | Affymetrix: GenomeWideSNP_6 Illumina: Human660W-Quad BeadChip Illumina: Human1M-Duo BeadChip |
11 | Hypertension Aging Arterial Pressure Arteriosclerosis Atherosclerosis Biomarkers Blood Pressure Cardiovascular Diseases Cholesterol Cholesterol, HDL Cholesterol, LDL Coronary Artery Disease Diabetes Mellitus Echocardiography Endophenotypes Hyperglycemia Hyperinsulinism Hypertrophy, Left Ventricular Inflammation Kidney Failure, Chronic Leukoaraiosis Lipids Obesity Obesity, Abdominal Peripheral Arterial Disease Renal Insufficiency, Chronic Triglycerides Vascular Calcification Hypertension |
Sibling Cohort | Genetic Epidemiology Network of Arteriopathy (GENOA): GWAS Studies | 3039 | Affymetrix: GenomeWideSNP_6 Illumina: Human660W-Quad BeadChip Illumina: Human1M-Duo BeadChip |
12 | Aging Aging |
Control Set | Spatiotemporal Transcriptome of the Human Brain | 57 | |
13 | Brain Diseases Growth and Development Aging Brain Diseases |
Control Set | BrainSpan Atlas of the Human Brain | 61 | Illumina: Genome Analyzer IIX Illumina: HiSeq 2000 Illumina: Genome Analyzer IIX Illumina: Genome Analyzer IIX Illumina: HiSeq 2000 Illumina: HumanOmni2.5-Quad Illumina: Infinium HumanMethylation450 BeadChip Affymetrix: GeneChip Human Exon 1.0 ST Array |
14 | Hutchinson-Gilford Progeria Syndrome Xeroderma Pigmentosum, Complementation Group C Aging Hutchinson-Gilford Progeria Syndrome |
Population | Detection of Somatic Mutations In Vitro Aging Cells | 13 | Illumina: HiSeq Roche NimbleGen: SeqCap EZ Choice Library Illumina: HumanOmniExpress-12v1_H |