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Genotype Selection - Genes

85300
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Association Results 1 - 1 of 1 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 21884 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 42 of 42 Searched by gene IDs retrieved from gene search.
dbGaP Studies 1 - 26 of 26Searched by traits retrieved from association results.
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
ATCAYATCAY kinesin light chain interacting caytaxin 19 : 3,880,685 - 3,928,082608179
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["19", 3880685, 3928082] ], "markers": { "19": [ ["ATCAY", "NC_000019.10", 3880685, 3928082, "ATCAY kinesin light chain interacting caytaxin", "BNIP-H, CLAC", 85300] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Aging rs10412199 UTR-3 ATCAY 19 : 3,927,773 3.000 x 10-6 NHGRI European 21782286
{ "section": "assoc", "summary": "1 - 1 of 1", "mesh": [ "Aging" ], "genes": [85300], "snps": [10412199], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 1 }

Get information.SNPs

1 - 50 of 21884 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2145351526 19 : 3,928,582 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
2 rs2145351516 19 : 3,928,575 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
3 rs2145351515 19 : 3,928,563 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
4 rs2145351512 19 : 3,928,556 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
5 rs2145351505 19 : 3,928,549 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
6 rs2145351499 19 : 3,928,548 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
7 rs2145351497 19 : 3,928,538 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
8 rs2145351494 19 : 3,928,530 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
9 rs2145351487 19 : 3,928,529 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
10 rs2145351482 19 : 3,928,516 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
11 rs2145351476 19 : 3,928,514 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
12 rs2145351467 19 : 3,928,513 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
13 rs2145351460 19 : 3,928,497 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
14 rs2145351458 19 : 3,928,484 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
15 rs2145351453 19 : 3,928,480 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
16 rs2145351447 19 : 3,928,479 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
17 rs2145351443 19 : 3,928,479 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
18 rs2145351439 19 : 3,928,478 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
19 rs2145351433 19 : 3,928,453 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
20 rs2145351428 19 : 3,928,450 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
21 rs2145351426 19 : 3,928,449 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
22 rs2145351420 19 : 3,928,447 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
23 rs2145351416 19 : 3,928,441 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
24 rs2145351414 19 : 3,928,423 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
25 rs2145351410 19 : 3,928,415 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
26 rs2145351404 19 : 3,928,410 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
27 rs2145351400 19 : 3,928,402 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
28 rs2145351394 19 : 3,928,403 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
29 rs2145351386 19 : 3,928,397 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
30 rs2145351381 19 : 3,928,395 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
31 rs2145351379 19 : 3,928,394 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
32 rs2145351375 19 : 3,928,390 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
33 rs2145351371 19 : 3,928,385 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
34 rs2145351351 19 : 3,928,376 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
35 rs2145351328 19 : 3,928,372 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
36 rs2145351319 19 : 3,928,370 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
37 rs2145351316 19 : 3,928,355 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
38 rs2145351307 19 : 3,928,354 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
39 rs2145351302 19 : 3,928,347 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
40 rs2145351297 19 : 3,928,345 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
41 rs2145351293 19 : 3,928,322 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
42 rs2145351288 19 : 3,928,321 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
43 rs2145351283 19 : 3,928,319 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
44 rs2145351274 19 : 3,928,301 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
45 rs2145351269 19 : 3,928,270 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
46 rs2145351261 19 : 3,928,269 500B_downstream_variant, downstream_transcript_variant ATCAY n/a
47 rs2145351255 19 : 3,928,268 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
48 rs2145351250 19 : 3,928,266 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
49 rs2145351245 19 : 3,928,265 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
50 rs2145351241 19 : 3,928,258 500B_downstream_variant, downstream_transcript_variant ATCAY Yes
{ "section": "SNP", "summary": "1 - 50 of 21884", "genes": [], "retstart": 0, "pageSize": 50, "count": 21884, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gaphttps.ncbi.nlm.nih.gov80gapphegenihttps://https.ncbi.nlm.nih.gov/gaphttps://https.ncbi.nlm.nih.govhttps://https.ncbi.nlm.nih.gov/gap/phegeni/gaphttps://https.ncbi.nlm.nih.gov/gap/phegeni/phegenitrue0C429C4D78166321_0000SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap15085300 0C429C4D78166321_0000SID1-SuYezkIVE5EXueQAPoEHGkCkVHV4CE3MqKV03qp_GA6@0C429C4D78166321_0000SID
1 - 42 of 42 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL069065621562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum202223423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland303315923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta404424723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary404414123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2450559723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia303313323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum303313823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9404411523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus303310223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus505510323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid404417323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse303320723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis303328123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage303321723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial404433323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
77GTEx_Pancreas202219423715323phs000424.v6phs000424.v6
78GTEx_Pituitary505512423715323phs000424.v6phs000424.v6
79GTEx_Prostate202212023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg303338823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum202210523715323phs000424.v6phs000424.v6
84GTEx_Stomach303320223715323phs000424.v6phs000424.v6
85GTEx_Testis202219923715323phs000424.v6phs000424.v6
86GTEx_Thyroid303334723715323phs000424.v6phs000424.v6
87GTEx_Uterus20228923715323phs000424.v6phs000424.v6
88GTEx_Vagina30339823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood202243023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 42 of 42"}

Get information.dbGaP Studies

1 - 26 of 26Download Modify Search
#
Disease
Study Type
Study Name
Participants
Platform
1 Growth and Development
Aging
Aging
Control Set BrainCloud: Data from Human Postmortem Brain Across the Lifespan 270 Illumina: HumanHap650Yv3.0
Illumina: Human1M-Duov3_B
2 Aging
Longevity
Centenarian
Centenarian
Case Set NHLBI and NIA The New England Centenarian Study (NECS) 2 Illumina: Genome Analyzer II
3 Aging
Neoplasms
Arthritis
Lung Diseases, Obstructive
Dementia
Heart Diseases
Heart Failure
Hypertension
Myocardial Infarction
Diabetes Mellitus
Hypercholesterolemia
Obesity
Body Weight
Mobility Limitation
Pain
Cholesterol
Hemoglobin A, Glycosylated
C-Reactive Protein
Cystatin C
Depression
Alcohol Drinking
Smoking
Personality
Life Style
Cognition
Demography
Ethnic Groups
Health Status
Population Groups
Housing
Independent Living
Socioeconomic Factors
Career Mobility
Educational Status
Employment
Family Characteristics
Income
Occupations
Poverty
Social Change
Social Class
Social Conditions
Risk Factors
Aging
Longitudinal Health and Retirement Study (HRS) 15620 Illumina: HumanOmni2.5
4 Aging
Aging
Cohort Immunosenescence: Immunity in the Young and Aged 9 Illumina: MiSeq
5 Dementia
Alzheimer Disease
Aging
Aged
Age Factors
Dementia
Case-Control Group Health/UW Aging and Dementia eMERGE Study 3756 Illumina: Human660W-Quad_v1_A
6 Aging
Antigens, Differentiation, T-Lymphocyte
T-Lymphocytes
Aging
Case-Control Epigenomics of Human CD8 T cell Differentiation and Aging 23 Illumina: HiSeq 2500
Illumina: HiSeq 2500
7 Aging
Anemia, Iron-Deficiency
Anxiety Disorders
Asthma
Bacterial Infections and Mycoses
Cardiovascular Diseases
Depressive Disorder
Dermatomycoses
Diabetes Mellitus, Type 2
Digestive System Diseases
Dyslipidemias
Eye Diseases
Hemic and Lymphatic Diseases
Hemorrhoids
Hernia, Abdominal
Hypertension
Irritable Bowel Syndrome
Macular Degeneration
Mental Disorders
Mood Disorders
Musculoskeletal Diseases
Neoplasms
Osteoarthritis
Osteoporosis
Pathological Conditions, Signs and Symptoms
Peptic Ulcer
Peripheral Vascular Diseases
Respiratory Tract Diseases
Rhinitis
Sleep Disorders
Sleep Initiation and Maintenance Disorders
Stress Disorders, Traumatic, Acute
Varicose Veins
Vascular Diseases
Aging
Cohort Resource for Genetic Epidemiology Research on Aging (GERA) 78419 Affymetrix: Axiom_KP_UCSF_AFR
Affymetrix: Axiom_KP_UCSF_EAS
Affymetrix: Axiom_KP_UCSF_EUR
Affymetrix: Axiom_KP_UCSF_LAT
8 Aging
Anemia, Iron-Deficiency
Anxiety Disorders
Asthma
Bacterial Infections and Mycoses
Cardiovascular Diseases
Depressive Disorder
Dermatomycoses
Diabetes Mellitus, Type 2
Digestive System Diseases
Dyslipidemias
Eye Diseases
Hemic and Lymphatic Diseases
Hemorrhoids
Hernia, Abdominal
Hypertension
Irritable Bowel Syndrome
Macular Degeneration
Mental Disorders
Mood Disorders
Musculoskeletal Diseases
Neoplasms
Osteoarthritis
Osteoporosis
Pathological Conditions, Signs and Symptoms
Peptic Ulcer
Peripheral Vascular Diseases
Respiratory Tract Diseases
Rhinitis
Sleep Disorders
Sleep Initiation and Maintenance Disorders
Stress Disorders, Traumatic, Acute
Varicose Veins
Vascular Diseases
Aging
Cohort Research Program on Genes, Environment and Health (RPGEH) 78423
9 Coronary Artery Disease
Cholesterol
Insulin
Blood Glucose
Type 2 Diabetes
C-Reactive Protein
Blood Pressure
Aging
Smoking
Body Mass Index
Coronary Artery Disease
Case-Control NHLBI's BA23 in WHI 2129 Illumina: Infinium HumanMethylation450 BeadChip
Applied Biosystems: TaqMan OpenArrays
10 Hypertension
Aging
Arterial Pressure
Arteriosclerosis
Atherosclerosis
Biomarkers
Blood Pressure
Cardiovascular Diseases
Cholesterol
Cholesterol, HDL
Cholesterol, LDL
Coronary Artery Disease
Diabetes Mellitus
Echocardiography
Endophenotypes
Hyperglycemia
Hyperinsulinism
Hypertrophy, Left Ventricular
Inflammation
Kidney Failure, Chronic
Leukoaraiosis
Lipids
Obesity
Obesity, Abdominal
Peripheral Arterial Disease
Renal Insufficiency, Chronic
Triglycerides
Vascular Calcification
Hypertension
Sibling Cohort Genetic Epidemiology Network of Arteriopathy (GENOA) 3462 Affymetrix: GenomeWideSNP_6
Illumina: Human660W-Quad BeadChip
Illumina: Human1M-Duo BeadChip
11 Hypertension
Aging
Arterial Pressure
Arteriosclerosis
Atherosclerosis
Biomarkers
Blood Pressure
Cardiovascular Diseases
Cholesterol
Cholesterol, HDL
Cholesterol, LDL
Coronary Artery Disease
Diabetes Mellitus
Echocardiography
Endophenotypes
Hyperglycemia
Hyperinsulinism
Hypertrophy, Left Ventricular
Inflammation
Kidney Failure, Chronic
Leukoaraiosis
Lipids
Obesity
Obesity, Abdominal
Peripheral Arterial Disease
Renal Insufficiency, Chronic
Triglycerides
Vascular Calcification
Hypertension
Sibling Cohort Genetic Epidemiology Network of Arteriopathy (GENOA): GWAS Studies 3039 Affymetrix: GenomeWideSNP_6
Illumina: Human660W-Quad BeadChip
Illumina: Human1M-Duo BeadChip
12 Aging
Aging
Control Set Spatiotemporal Transcriptome of the Human Brain 57
13 Brain Diseases
Growth and Development
Aging
Brain Diseases
Control Set BrainSpan Atlas of the Human Brain 61 Illumina: Genome Analyzer IIX
Illumina: HiSeq 2000
Illumina: Genome Analyzer IIX
Illumina: Genome Analyzer IIX
Illumina: HiSeq 2000
Illumina: HumanOmni2.5-Quad
Illumina: Infinium HumanMethylation450 BeadChip
Affymetrix: GeneChip Human Exon 1.0 ST Array
14 Hutchinson-Gilford Progeria Syndrome
Xeroderma Pigmentosum, Complementation Group C
Aging
Hutchinson-Gilford Progeria Syndrome
Population Detection of Somatic Mutations In Vitro Aging Cells 13 Illumina: HiSeq
Roche NimbleGen: SeqCap EZ Choice Library
Illumina: HumanOmniExpress-12v1_H
{ "section": "GAP", "summary": "1 - 26 of 26", "retstart": 0, "pageSize": 50, "count": 26 }
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