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Genotype Selection - Genes

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Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 6743 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 48 of 48 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
PDLIM4PDZ and LIM domain 4 5 : 132,257,696 - 132,273,454603422
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["5", 132257696, 132273454] ], "markers": { "5": [ ["PDLIM4", "NC_000005.10", 132257696, 132273454, "PDZ and LIM domain 4", "RIL", 8572] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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No data found.

Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 6743 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2126683633 5 : 132,273,946 downstream_transcript_variant, 500B_downstream_variant PDLIM4 n/a
2 rs2126683584 5 : 132,273,902 downstream_transcript_variant, 500B_downstream_variant PDLIM4 n/a
3 rs2126683531 5 : 132,273,829 downstream_transcript_variant, 500B_downstream_variant PDLIM4 n/a
4 rs2126683493 5 : 132,273,795 downstream_transcript_variant, 500B_downstream_variant PDLIM4 Yes
5 rs2126683445 5 : 132,273,742 downstream_transcript_variant, 500B_downstream_variant PDLIM4 n/a
6 rs2126683381 5 : 132,273,653 downstream_transcript_variant, 500B_downstream_variant PDLIM4 Yes
7 rs2126683378 5 : 132,273,649 downstream_transcript_variant, 500B_downstream_variant PDLIM4 n/a
8 rs2126683285 5 : 132,273,518 downstream_transcript_variant, 500B_downstream_variant PDLIM4 Yes
9 rs2126683280 5 : 132,273,503 downstream_transcript_variant, 500B_downstream_variant PDLIM4 Yes
10 rs2126683272 5 : 132,273,490 downstream_transcript_variant, 500B_downstream_variant PDLIM4 n/a
11 rs2126683173 5 : 132,273,338 3_prime_UTR_variant PDLIM4 Yes
12 rs2126683060 5 : 132,273,226 3_prime_UTR_variant PDLIM4 n/a
13 rs2126682923 5 : 132,273,110 3_prime_UTR_variant PDLIM4 n/a
14 rs2126682667 5 : 132,272,861 3_prime_UTR_variant PDLIM4 n/a
15 rs2126682611 5 : 132,272,787 3_prime_UTR_variant PDLIM4 n/a
16 rs2126682590 5 : 132,272,765 3_prime_UTR_variant PDLIM4 Yes
17 rs2126682556 5 : 132,272,725 3_prime_UTR_variant PDLIM4 n/a
18 rs2126682381 5 : 132,272,595 3_prime_UTR_variant PDLIM4 n/a
19 rs2126682365 5 : 132,272,569 3_prime_UTR_variant PDLIM4 Yes
20 rs2126682363 5 : 132,272,566 3_prime_UTR_variant PDLIM4 Yes
21 rs2126682323 5 : 132,272,542 3_prime_UTR_variant PDLIM4 n/a
22 rs2126682264 5 : 132,272,450 3_prime_UTR_variant PDLIM4 n/a
23 rs2126682236 5 : 132,272,400 3_prime_UTR_variant PDLIM4 n/a
24 rs2126682220 5 : 132,272,392 3_prime_UTR_variant PDLIM4 n/a
25 rs2126682064 5 : 132,272,244 3_prime_UTR_variant PDLIM4 n/a
26 rs2126681651 5 : 132,271,990 intron_variant PDLIM4 n/a
27 rs2126681546 5 : 132,271,916 intron_variant PDLIM4 Yes
28 rs2126681420 5 : 132,271,859 intron_variant, missense_variant, coding_sequence_variant PDLIM4 Yes
29 rs2126680792 5 : 132,271,525 intron_variant, stop_gained, coding_sequence_variant PDLIM4 n/a
30 rs2126680746 5 : 132,271,484 intron_variant, frameshift_variant, coding_sequence_variant PDLIM4 Yes
31 rs2126680711 5 : 132,271,471 intron_variant, missense_variant, coding_sequence_variant PDLIM4 Yes
32 rs2126680708 5 : 132,271,467 splice_donor_variant, inframe_insertion, coding_sequence_variant PDLIM4 n/a
33 rs2126680675 5 : 132,271,459 coding_sequence_variant, synonymous_variant PDLIM4 n/a
34 rs2126680570 5 : 132,271,392 coding_sequence_variant, missense_variant PDLIM4 n/a
35 rs2126680355 5 : 132,271,295 intron_variant PDLIM4 n/a
36 rs2126680286 5 : 132,271,241 intron_variant PDLIM4 n/a
37 rs2126680122 5 : 132,271,093 splice_donor_variant PDLIM4 n/a
38 rs2126679914 5 : 132,270,950 coding_sequence_variant, synonymous_variant PDLIM4 Yes
39 rs2126679844 5 : 132,270,910 intron_variant PDLIM4 n/a
40 rs2126679791 5 : 132,270,839 intron_variant PDLIM4 Yes
41 rs2126679704 5 : 132,270,734 intron_variant PDLIM4 n/a
42 rs2126679695 5 : 132,270,725 intron_variant PDLIM4 n/a
43 rs2126679657 5 : 132,270,687 intron_variant PDLIM4 Yes
44 rs2126679635 5 : 132,270,656 intron_variant PDLIM4 n/a
45 rs2126679561 5 : 132,270,595 intron_variant PDLIM4 Yes
46 rs2126679541 5 : 132,270,552 intron_variant PDLIM4 n/a
47 rs2126679540 5 : 132,270,550 intron_variant PDLIM4 n/a
48 rs2126679535 5 : 132,270,549 intron_variant PDLIM4 n/a
49 rs2126679495 5 : 132,270,518 intron_variant PDLIM4 Yes
50 rs2126679489 5 : 132,270,504 intron_variant PDLIM4 Yes
{ "section": "SNP", "summary": "1 - 50 of 6743", "genes": [], "retstart": 0, "pageSize": 50, "count": 6743, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gaphttps.ncbi.nlm.nih.gov80gapphegenihttps://https.ncbi.nlm.nih.gov/gaphttps://https.ncbi.nlm.nih.govhttps://https.ncbi.nlm.nih.gov/gap/phegeni/gaphttps://https.ncbi.nlm.nih.gov/gap/phegeni/phegenitrue95B70C2D7971FA21_0000SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap1508572 N4IgDgTgpgbg mAFgSwCYgFwgJwFYBCA7AAwDCATACKHaECMAYgILl3Hsedd0gC QA==95B70C2D7971FA21_0000SID1PS-pbEh0p8qVWWLgJMMNUXiCkBVl6X-RBojiRZptbukf@95B70C2D7971FA21_0000SID
1 - 48 of 48 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
39Transcriptome genetics using second generation sequencing in a Caucasian population40146020220756HapMap3E-MTAB-197,
E-MTAB-198
40FHS_eQTL10461058032562228122634phs000342phs000363
41FHS_eGene_leadQTLs1011562228122634phs000342phs000363
42A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines202195023345460EGAS00000000137E-MTAB-1428,
E-MTAB-1425
46GTEx_Adipose_Subcutaneous202237023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum202223423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus202210223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage202221723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
73GTEx_Lung202233823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial303333323715323phs000424.v6phs000424.v6
76GTEx_Ovary202210923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum202210523715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
84GTEx_Stomach202220223715323phs000424.v6phs000424.v6
85GTEx_Testis101119923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 48 of 48"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
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