U.S. flag

An official website of the United States government

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Summary

Search Criteria

Genotype Selection - Genes

23623
Modify Search

Search Results

Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 5213 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 45 of 45 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
Genome View 1 gene over 1 chromosome.
Modify Search Show All Hide All

Get information.

Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
RUSC1RUN and SH3 domain containing 1 1 : 155,320,894 - 155,331,118617318
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["1", 155320894, 155331118] ], "markers": { "1": [ ["RUSC1", "NC_000001.11", 155320894, 155331118, "RUN and SH3 domain containing 1", "NESCA", 23623] ] }, "unmapped": [ ] } }

Get information.Genome View

Ideogram SetupGet information.

Orientation:   
Include:         
Display:   
Chromosomes:   
UpdateDownload
Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
Creating ideogram...
Click on ideogram annotation to show sequence display

Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 5213 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2148292982 1 : 155,331,548 downstream_transcript_variant, 500B_downstream_variant RUSC1 Yes
2 rs2148292797 1 : 155,331,439 downstream_transcript_variant, 500B_downstream_variant RUSC1 n/a
3 rs2148292760 1 : 155,331,416 downstream_transcript_variant, 500B_downstream_variant RUSC1 Yes
4 rs2148292743 1 : 155,331,407 downstream_transcript_variant, 500B_downstream_variant RUSC1 Yes
5 rs2148292526 1 : 155,331,248 downstream_transcript_variant, 500B_downstream_variant RUSC1 n/a
6 rs2148292272 1 : 155,331,091 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant RUSC1 n/a
7 rs2148292246 1 : 155,331,066 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant RUSC1 Yes
8 rs2148292215 1 : 155,331,042 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant RUSC1 n/a
9 rs2148292195 1 : 155,331,027 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant RUSC1 Yes
10 rs2148292071 1 : 155,330,944 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant RUSC1 n/a
11 rs2148292069 1 : 155,330,943 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant RUSC1 Yes
12 rs2148291694 1 : 155,330,716 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant RUSC1 Yes
13 rs2148291474 1 : 155,330,604 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant RUSC1 n/a
14 rs2148291236 1 : 155,330,541 coding_sequence_variant, synonymous_variant, genic_downstream_transcript_variant, non_coding_transcript_variant RUSC1 Yes
15 rs2148290722 1 : 155,330,413 coding_sequence_variant, missense_variant, genic_downstream_transcript_variant, non_coding_transcript_variant RUSC1 n/a
16 rs2148290515 1 : 155,330,337 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
17 rs2148290457 1 : 155,330,309 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
18 rs2148290138 1 : 155,330,151 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
19 rs2148290120 1 : 155,330,144 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
20 rs2148289771 1 : 155,329,985 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
21 rs2148289572 1 : 155,329,949 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
22 rs2148289457 1 : 155,329,914 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
23 rs2148289020 1 : 155,329,749 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
24 rs2148288967 1 : 155,329,723 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
25 rs2148288922 1 : 155,329,715 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
26 rs2148288913 1 : 155,329,714 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
27 rs2148288890 1 : 155,329,706 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
28 rs2148288838 1 : 155,329,678 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
29 rs2148288604 1 : 155,329,550 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
30 rs2148288480 1 : 155,329,500 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
31 rs2148288186 1 : 155,329,412 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
32 rs2148288067 1 : 155,329,386 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
33 rs2148288040 1 : 155,329,378 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
34 rs2148288010 1 : 155,329,373 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
35 rs2148288003 1 : 155,329,368 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
36 rs2148287956 1 : 155,329,343 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
37 rs2148287899 1 : 155,329,310 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
38 rs2148287881 1 : 155,329,306 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
39 rs2148287832 1 : 155,329,274 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
40 rs2148287151 1 : 155,329,000 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
41 rs2148287125 1 : 155,328,985 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
42 rs2148286948 1 : 155,328,908 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
43 rs2148286275 1 : 155,328,703 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
44 rs2148285982 1 : 155,328,578 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
45 rs2148285887 1 : 155,328,527 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
46 rs2148285616 1 : 155,328,416 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
47 rs2148285554 1 : 155,328,397 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
48 rs2148285547 1 : 155,328,396 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
49 rs2148285516 1 : 155,328,381 intron_variant, genic_downstream_transcript_variant RUSC1 Yes
50 rs2148285420 1 : 155,328,324 intron_variant, genic_downstream_transcript_variant RUSC1 n/a
{ "section": "SNP", "summary": "1 - 50 of 5213", "genes": [], "retstart": 0, "pageSize": 50, "count": 5213, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gaphttps.ncbi.nlm.nih.gov80gapphegenihttps://https.ncbi.nlm.nih.gov/gaphttps://https.ncbi.nlm.nih.govhttps://https.ncbi.nlm.nih.gov/gap/phegeni/gaphttps://https.ncbi.nlm.nih.gov/gap/phegeni/phegenitrueCE8C3DA973BF0A51_2269SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap15023623 CE8C3DA973BF0A51_2269SID12WYpj@CE8C3DA973BF0A51_2269SID
1 - 45 of 45 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL15555544562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts202230523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage202221723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver202213823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis101119923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood202243023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 45 of 45"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
External link. Please review our privacy policy.