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Genotype Selection - Genes

375616
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Association Results 1 - 13 of 13 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 15508 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 44 of 44 Searched by gene IDs retrieved from gene search.
dbGaP Studies  Retrieving... Searched by traits retrieved from association results.
Genome View 1 gene over 1 chromosome.
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
KCPkielin cysteine rich BMP regulator 7 : 128,910,709 - 128,876,865609344
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["7", 128876865, 128910709] ], "markers": { "7": [ ["KCP", "NC_000007.14", 128876865, 128910709, "kielin cysteine rich BMP regulator", "CRIM2, KCP1, NET67", 375616] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

1 - 13 of 13 Download Modify Search
#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Lupus Erythematosus, Systemic rs4728142 intergenic KCP, IRF5 7 : 128,933,913 1.000 x 10-23 NHGRI Indian American 26606652
2 Lupus Erythematosus, Systemic rs4728142 intergenic KCP, IRF5 7 : 128,933,913 8.000 x 10-19 NHGRI East Asian 19838193
3 Colitis, Ulcerative rs4728142 intergenic KCP, IRF5 7 : 128,933,913 2.000 x 10-14 NHGRI European 26192919
4 Colitis, Ulcerative rs4728142 intergenic KCP, IRF5 7 : 128,933,913 4.000 x 10-14 NHGRI European 23128233
5 Lupus Erythematosus, Systemic rs113478424 intergenic KCP, IRF5 7 : 128,935,744 4.000 x 10-12 NHGRI East Asian 26663301
6 Colitis, Ulcerative rs4728142 intergenic KCP, IRF5 7 : 128,933,913 3.000 x 10-10 NHGRI European 28067908
7 Lupus Erythematosus, Systemic rs4728142 intergenic KCP, IRF5 7 : 128,933,913 7.000 x 10-10 NHGRI European 24871463
8 Lupus Erythematosus, Systemic rs729302 intergenic KCP, IRF5 7 : 128,928,906 1.000 x 10-9 NHGRI East Asian 23273568
9 Colitis, Ulcerative rs4728142 intergenic KCP, IRF5 7 : 128,933,913 2.000 x 10-8 NHGRI European 21297633
10 Lupus Erythematosus, Systemic rs729302 intergenic KCP, IRF5 7 : 128,928,906 4.000 x 10-8 NHGRI European 23053960
11 Inflammatory Bowel Diseases rs4728142 intergenic KCP, IRF5 7 : 128,933,913 6.000 x 10-7 NHGRI European 26192919
12 Lupus Erythematosus, Systemic rs4728142 intergenic KCP, IRF5 7 : 128,933,913 7.300 x 10-7 dbGaP phs000202 European 18204446
13 Lupus Erythematosus, Systemic rs4728142 intergenic KCP, IRF5 7 : 128,933,913 7.300 x 10-7 dbGaP phs000216 European 18204446
{ "section": "assoc", "summary": "1 - 13 of 13", "mesh": [ "Colitis, Ulcerative", "Inflammatory Bowel Diseases", "Lupus Erythematosus, Systemic" ], "genes": [3663, 375616], "snps": [729302, 4728142, 113478424], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 13 }

Get information.SNPs

1 - 50 of 15508 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2128952381 7 : 128,912,691 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
2 rs2128952374 7 : 128,912,668 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
3 rs2128952322 7 : 128,912,569 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
4 rs2128952313 7 : 128,912,559 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
5 rs2128952272 7 : 128,912,444 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
6 rs2128952259 7 : 128,912,414 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
7 rs2128952257 7 : 128,912,409 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
8 rs2128952250 7 : 128,912,384 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
9 rs2128952234 7 : 128,912,335 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
10 rs2128952228 7 : 128,912,324 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
11 rs2128952184 7 : 128,912,154 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
12 rs2128952141 7 : 128,911,957 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
13 rs2128952137 7 : 128,911,940 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
14 rs2128952133 7 : 128,911,923 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
15 rs2128952131 7 : 128,911,919 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
16 rs2128952129 7 : 128,911,916 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
17 rs2128952128 7 : 128,911,904 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
18 rs2128952126 7 : 128,911,900 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
19 rs2128952110 7 : 128,911,875 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
20 rs2128952003 7 : 128,911,586 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
21 rs2128951943 7 : 128,911,384 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
22 rs2128951936 7 : 128,911,369 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
23 rs2128951917 7 : 128,911,318 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
24 rs2128951911 7 : 128,911,307 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
25 rs2128951903 7 : 128,911,274 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
26 rs2128951895 7 : 128,911,239 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
27 rs2128951853 7 : 128,911,069 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
28 rs2128951850 7 : 128,911,058 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
29 rs2128951839 7 : 128,911,012 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
30 rs2128951837 7 : 128,911,007 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
31 rs2128951830 7 : 128,910,978 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
32 rs2128951829 7 : 128,910,973 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
33 rs2128951828 7 : 128,910,970 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
34 rs2128951810 7 : 128,910,900 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
35 rs2128951798 7 : 128,910,862 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
36 rs2128951795 7 : 128,910,850 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
37 rs2128951778 7 : 128,910,821 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
38 rs2128951753 7 : 128,910,763 upstream_transcript_variant, 2KB_upstream_variant KCP Yes
39 rs2128951741 7 : 128,910,723 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
40 rs2128951738 7 : 128,910,717 upstream_transcript_variant, 2KB_upstream_variant KCP n/a
41 rs2128951709 7 : 128,910,639 coding_sequence_variant, missense_variant KCP n/a
42 rs2128951692 7 : 128,910,599 splice_donor_variant KCP n/a
43 rs2128951684 7 : 128,910,531 intron_variant KCP n/a
44 rs2128951680 7 : 128,910,515 intron_variant KCP n/a
45 rs2128951660 7 : 128,910,404 intron_variant KCP n/a
46 rs2128951647 7 : 128,910,361 intron_variant KCP Yes
47 rs2128951613 7 : 128,910,195 intron_variant KCP n/a
48 rs2128951612 7 : 128,910,185 intron_variant KCP Yes
49 rs2128951611 7 : 128,910,182 intron_variant KCP n/a
50 rs2128951601 7 : 128,910,157 intron_variant KCP n/a
{ "section": "SNP", "summary": "1 - 50 of 15508", "genes": [], "retstart": 0, "pageSize": 50, "count": 15508, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gaphttps.ncbi.nlm.nih.gov80gapphegenihttps://https.ncbi.nlm.nih.gov/gaphttps://https.ncbi.nlm.nih.govhttps://https.ncbi.nlm.nih.gov/gap/phegeni/gaphttps://https.ncbi.nlm.nih.gov/gap/phegeni/phegenitrueCE8BD78D73D3DFA1_2290SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150375616 CE8BD78D73D3DFA1_2290SID1ZOY9x@CE8BD78D73D3DFA1_2290SID
1 - 44 of 44 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL1176065363562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous202237023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum202223423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial202236023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2420229723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia202213323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere202211423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum303313823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9302311523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue202221923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts202230523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid404417323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse303320723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction202217523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa202232923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage202221723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle202224823715323phs000424.v6phs000424.v6
73GTEx_Lung202233823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal202245423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
77GTEx_Pancreas202219423715323phs000424.v6phs000424.v6
78GTEx_Pituitary303312423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic202226923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg202238823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen303311923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis202219923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina20229823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood202243023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 44 of 44"}
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