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Genotype Selection - Genes

386680
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Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 1645 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 6 of 6 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
KRTAP10-5keratin associated protein 10-5 21 : 44,580,604 - 44,579,455
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["21", 44579455, 44580604] ], "markers": { "21": [ ["KRTAP10-5", "NC_000021.9", 44579455, 44580604, "keratin associated protein 10-5", "KAP10.5, KAP18-5, KAP18.5, KRTAP10.5, KRTAP18-5, KRTAP18.1, KRTAP18.5", 386680] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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No data found.

Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 1645 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2146104995 21 : 44,582,323 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
2 rs2146104955 21 : 44,582,299 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
3 rs2146104824 21 : 44,582,234 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 n/a
4 rs2146104562 21 : 44,582,099 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
5 rs2146104423 21 : 44,582,024 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
6 rs2146104281 21 : 44,581,909 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
7 rs2146103863 21 : 44,581,687 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
8 rs2146103666 21 : 44,581,592 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
9 rs2146103479 21 : 44,581,432 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
10 rs2146103332 21 : 44,581,310 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
11 rs2146103300 21 : 44,581,288 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 n/a
12 rs2146103187 21 : 44,581,206 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
13 rs2146103130 21 : 44,581,168 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
14 rs2146102966 21 : 44,581,061 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
15 rs2146102857 21 : 44,580,971 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 n/a
16 rs2146102842 21 : 44,580,952 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 n/a
17 rs2146102363 21 : 44,580,635 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 n/a
18 rs2146102163 21 : 44,580,588 5_prime_UTR_variant, intron_variant TSPEAR, KRTAP10-5 n/a
19 rs2146101284 21 : 44,580,333 synonymous_variant, intron_variant, coding_sequence_variant TSPEAR, KRTAP10-5 n/a
20 rs2146101109 21 : 44,580,285 stop_gained, intron_variant, coding_sequence_variant TSPEAR, KRTAP10-5 n/a
21 rs2146100910 21 : 44,580,208 missense_variant, intron_variant, coding_sequence_variant TSPEAR, KRTAP10-5 Yes
22 rs2146100831 21 : 44,580,193 missense_variant, intron_variant, coding_sequence_variant TSPEAR, KRTAP10-5 n/a
23 rs2146100413 21 : 44,580,066 synonymous_variant, intron_variant, coding_sequence_variant TSPEAR, KRTAP10-5 Yes
24 rs2146100191 21 : 44,579,991 synonymous_variant, intron_variant, coding_sequence_variant TSPEAR, KRTAP10-5 Yes
25 rs2146099989 21 : 44,579,944 frameshift_variant, intron_variant, coding_sequence_variant TSPEAR, KRTAP10-5 Yes
26 rs2146099925 21 : 44,579,933 synonymous_variant, intron_variant, coding_sequence_variant TSPEAR, KRTAP10-5 Yes
27 rs2146099897 21 : 44,579,927 missense_variant, intron_variant, coding_sequence_variant TSPEAR, KRTAP10-5 Yes
28 rs2146099192 21 : 44,579,782 missense_variant, intron_variant, coding_sequence_variant TSPEAR, KRTAP10-5 n/a
29 rs2146098775 21 : 44,579,668 3_prime_UTR_variant, intron_variant TSPEAR, KRTAP10-5 Yes
30 rs2146098388 21 : 44,579,558 3_prime_UTR_variant, intron_variant TSPEAR, KRTAP10-5 n/a
31 rs2146098208 21 : 44,579,493 3_prime_UTR_variant, intron_variant TSPEAR, KRTAP10-5 Yes
32 rs2146098191 21 : 44,579,484 3_prime_UTR_variant, intron_variant TSPEAR, KRTAP10-5 Yes
33 rs2146097684 21 : 44,579,260 500B_downstream_variant, intron_variant, downstream_transcript_variant TSPEAR, KRTAP10-5 Yes
34 rs2146097607 21 : 44,579,213 500B_downstream_variant, intron_variant, downstream_transcript_variant TSPEAR, KRTAP10-5 Yes
35 rs2146097591 21 : 44,579,206 500B_downstream_variant, intron_variant, downstream_transcript_variant TSPEAR, KRTAP10-5 Yes
36 rs2146097546 21 : 44,579,186 500B_downstream_variant, intron_variant, downstream_transcript_variant TSPEAR, KRTAP10-5 Yes
37 rs2146097233 21 : 44,579,063 500B_downstream_variant, intron_variant, downstream_transcript_variant TSPEAR, KRTAP10-5 Yes
38 rs2044895448 21 : 44,581,761 2KB_upstream_variant, upstream_transcript_variant, intron_variant TSPEAR, KRTAP10-5 Yes
39 rs1979058727 21 : 44,582,604 upstream_transcript_variant, 2KB_upstream_variant, intron_variant TSPEAR, KRTAP10-5 Yes
40 rs1979057976 21 : 44,582,601 upstream_transcript_variant, 2KB_upstream_variant, intron_variant TSPEAR, KRTAP10-5 Yes
41 rs1979057752 21 : 44,582,600 upstream_transcript_variant, 2KB_upstream_variant, intron_variant TSPEAR, KRTAP10-5 Yes
42 rs1979056459 21 : 44,582,582 upstream_transcript_variant, 2KB_upstream_variant, intron_variant TSPEAR, KRTAP10-5 Yes
43 rs1979055976 21 : 44,582,580 upstream_transcript_variant, 2KB_upstream_variant, intron_variant TSPEAR, KRTAP10-5 Yes
44 rs1979055753 21 : 44,582,574 upstream_transcript_variant, 2KB_upstream_variant, intron_variant TSPEAR, KRTAP10-5 Yes
45 rs1979055112 21 : 44,582,568 upstream_transcript_variant, 2KB_upstream_variant, intron_variant TSPEAR, KRTAP10-5 Yes
46 rs1979054899 21 : 44,582,567 upstream_transcript_variant, 2KB_upstream_variant, intron_variant TSPEAR, KRTAP10-5 Yes
47 rs1979054463 21 : 44,582,560 upstream_transcript_variant, 2KB_upstream_variant, intron_variant TSPEAR, KRTAP10-5 Yes
48 rs1979054236 21 : 44,582,552 upstream_transcript_variant, 2KB_upstream_variant, intron_variant TSPEAR, KRTAP10-5 Yes
49 rs1979053424 21 : 44,582,534 upstream_transcript_variant, 2KB_upstream_variant, intron_variant TSPEAR, KRTAP10-5 Yes
50 rs1979050661 21 : 44,582,505 upstream_transcript_variant, 2KB_upstream_variant, intron_variant TSPEAR, KRTAP10-5 Yes
{ "section": "SNP", "summary": "1 - 50 of 1645", "genes": [], "retstart": 0, "pageSize": 50, "count": 1645, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gaphttps.ncbi.nlm.nih.gov80gapphegenihttps://https.ncbi.nlm.nih.gov/gaphttps://https.ncbi.nlm.nih.govhttps://https.ncbi.nlm.nih.gov/gap/phegeni/gaphttps://https.ncbi.nlm.nih.gov/gap/phegeni/phegenitrueCE8D9D4273B51EF1_0032SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150386680 CE8D9D4273B51EF1_0032SID1nCcv3@CE8D9D4273B51EF1_0032SID
1 - 6 of 6 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
39Transcriptome genetics using second generation sequencing in a Caucasian population20126020220756HapMap3E-MTAB-197,
E-MTAB-198
40FHS_eQTL06826773562228122634phs000342phs000363
41FHS_eGene_leadQTLs0221562228122634phs000342phs000363
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 6 of 6"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
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