Search Summary
Search Criteria
Genotype Selection - Genes
386680
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Search Results
Association Results | No data found. | Searched by gene IDs retrieved from gene search. |
Genes | 1 - 1 of 1 | Searched by gene names and/or gene IDs. |
SNPs | 1 - 50 of 1645 | Searched by gene symbols retrieved from gene search. |
eQTL Data | 1 - 6 of 6 | Searched by gene IDs retrieved from gene search. |
dbGaP Studies | No data found. | Searched by traits retrieved from page 1 of association results. |
Genome View | Retrieving... |
Search Criteria
Select broad trait category to limit the items shown in the trait selection.
Select trait for search. Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser. This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.
Celiac Disease
Gene Search: CDKAL1
Location: MHC region
Genes
# | Symbol | Description | Location | OMIM | ||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | KRTAP10-5 | keratin associated protein 10-5 | 21 | : 44,580,604 - 44,579,455 | ||||||
| ||||||||||
Association Results
No association data found.
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{
"section": "assoc",
"summary": "No data found.",
"mesh": [
],
"genes": [],
"snps": [],
"page": 1,
"call": "BuildGaP",
"pageSize": 50,
"recCount": 0
}
SNPs
# | rs# | Location | Function Class | Gene | Diversity | |
---|---|---|---|---|---|---|
1 | rs2146104995 | 21 | : 44,582,323 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
2 | rs2146104955 | 21 | : 44,582,299 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
3 | rs2146104824 | 21 | : 44,582,234 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | n/a |
4 | rs2146104562 | 21 | : 44,582,099 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
5 | rs2146104423 | 21 | : 44,582,024 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
6 | rs2146104281 | 21 | : 44,581,909 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
7 | rs2146103863 | 21 | : 44,581,687 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
8 | rs2146103666 | 21 | : 44,581,592 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
9 | rs2146103479 | 21 | : 44,581,432 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
10 | rs2146103332 | 21 | : 44,581,310 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
11 | rs2146103300 | 21 | : 44,581,288 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | n/a |
12 | rs2146103187 | 21 | : 44,581,206 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
13 | rs2146103130 | 21 | : 44,581,168 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
14 | rs2146102966 | 21 | : 44,581,061 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
15 | rs2146102857 | 21 | : 44,580,971 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | n/a |
16 | rs2146102842 | 21 | : 44,580,952 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | n/a |
17 | rs2146102363 | 21 | : 44,580,635 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | n/a |
18 | rs2146102163 | 21 | : 44,580,588 | 5_prime_UTR_variant, intron_variant | TSPEAR, KRTAP10-5 | n/a |
19 | rs2146101284 | 21 | : 44,580,333 | synonymous_variant, intron_variant, coding_sequence_variant | TSPEAR, KRTAP10-5 | n/a |
20 | rs2146101109 | 21 | : 44,580,285 | stop_gained, intron_variant, coding_sequence_variant | TSPEAR, KRTAP10-5 | n/a |
21 | rs2146100910 | 21 | : 44,580,208 | missense_variant, intron_variant, coding_sequence_variant | TSPEAR, KRTAP10-5 | Yes |
22 | rs2146100831 | 21 | : 44,580,193 | missense_variant, intron_variant, coding_sequence_variant | TSPEAR, KRTAP10-5 | n/a |
23 | rs2146100413 | 21 | : 44,580,066 | synonymous_variant, intron_variant, coding_sequence_variant | TSPEAR, KRTAP10-5 | Yes |
24 | rs2146100191 | 21 | : 44,579,991 | synonymous_variant, intron_variant, coding_sequence_variant | TSPEAR, KRTAP10-5 | Yes |
25 | rs2146099989 | 21 | : 44,579,944 | frameshift_variant, intron_variant, coding_sequence_variant | TSPEAR, KRTAP10-5 | Yes |
26 | rs2146099925 | 21 | : 44,579,933 | synonymous_variant, intron_variant, coding_sequence_variant | TSPEAR, KRTAP10-5 | Yes |
27 | rs2146099897 | 21 | : 44,579,927 | missense_variant, intron_variant, coding_sequence_variant | TSPEAR, KRTAP10-5 | Yes |
28 | rs2146099192 | 21 | : 44,579,782 | missense_variant, intron_variant, coding_sequence_variant | TSPEAR, KRTAP10-5 | n/a |
29 | rs2146098775 | 21 | : 44,579,668 | 3_prime_UTR_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
30 | rs2146098388 | 21 | : 44,579,558 | 3_prime_UTR_variant, intron_variant | TSPEAR, KRTAP10-5 | n/a |
31 | rs2146098208 | 21 | : 44,579,493 | 3_prime_UTR_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
32 | rs2146098191 | 21 | : 44,579,484 | 3_prime_UTR_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
33 | rs2146097684 | 21 | : 44,579,260 | 500B_downstream_variant, intron_variant, downstream_transcript_variant | TSPEAR, KRTAP10-5 | Yes |
34 | rs2146097607 | 21 | : 44,579,213 | 500B_downstream_variant, intron_variant, downstream_transcript_variant | TSPEAR, KRTAP10-5 | Yes |
35 | rs2146097591 | 21 | : 44,579,206 | 500B_downstream_variant, intron_variant, downstream_transcript_variant | TSPEAR, KRTAP10-5 | Yes |
36 | rs2146097546 | 21 | : 44,579,186 | 500B_downstream_variant, intron_variant, downstream_transcript_variant | TSPEAR, KRTAP10-5 | Yes |
37 | rs2146097233 | 21 | : 44,579,063 | 500B_downstream_variant, intron_variant, downstream_transcript_variant | TSPEAR, KRTAP10-5 | Yes |
38 | rs2044895448 | 21 | : 44,581,761 | 2KB_upstream_variant, upstream_transcript_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
39 | rs1979058727 | 21 | : 44,582,604 | upstream_transcript_variant, 2KB_upstream_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
40 | rs1979057976 | 21 | : 44,582,601 | upstream_transcript_variant, 2KB_upstream_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
41 | rs1979057752 | 21 | : 44,582,600 | upstream_transcript_variant, 2KB_upstream_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
42 | rs1979056459 | 21 | : 44,582,582 | upstream_transcript_variant, 2KB_upstream_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
43 | rs1979055976 | 21 | : 44,582,580 | upstream_transcript_variant, 2KB_upstream_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
44 | rs1979055753 | 21 | : 44,582,574 | upstream_transcript_variant, 2KB_upstream_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
45 | rs1979055112 | 21 | : 44,582,568 | upstream_transcript_variant, 2KB_upstream_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
46 | rs1979054899 | 21 | : 44,582,567 | upstream_transcript_variant, 2KB_upstream_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
47 | rs1979054463 | 21 | : 44,582,560 | upstream_transcript_variant, 2KB_upstream_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
48 | rs1979054236 | 21 | : 44,582,552 | upstream_transcript_variant, 2KB_upstream_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
49 | rs1979053424 | 21 | : 44,582,534 | upstream_transcript_variant, 2KB_upstream_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
50 | rs1979050661 | 21 | : 44,582,505 | upstream_transcript_variant, 2KB_upstream_variant, intron_variant | TSPEAR, KRTAP10-5 | Yes |
eQTL Data
1 - 6 of 6
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Study | Result count | External references | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
⇩ | ID | Name | cis | trans | Markers | Probes | Subjects | PubMed ID | Ind. genotypes | Mol. phenotypes |
⇩ | 39 | Transcriptome genetics using second generation sequencing in a Caucasian population | 2 | 0 | 1 | 2 | 60 | 20220756 | HapMap3 | E-MTAB-197, E-MTAB-198 |
⇩ | 40 | FHS_eQTL | 0 | 682 | 677 | 3 | 5622 | 28122634 | phs000342 | phs000363 |
⇩ | 41 | FHS_eGene_leadQTLs | 0 | 2 | 2 | 1 | 5622 | 28122634 | phs000342 | phs000363 |
⇩ | 66 | GTEx_Colon_Transverse | 1 | 0 | 1 | 1 | 207 | 23715323 | phs000424.v6 | phs000424.v6 |
⇩ | 80 | GTEx_Skin_Not_Sun_Exposed_Suprapubic | 1 | 0 | 1 | 1 | 269 | 23715323 | phs000424.v6 | phs000424.v6 |
⇩ | 81 | GTEx_Skin_Sun_Exposed_Lower_leg | 1 | 0 | 1 | 1 | 388 | 23715323 | phs000424.v6 | phs000424.v6 |
dbGaP Studies
No dbGaP study data found.
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{
"section": "GAP",
"summary": "No data found.",
"retstart": 0,
"pageSize": 50,
"count": ""
}