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Items: 18

1.

Next generation RNA sequencing to identify overexpressed transporter genes in Zymoseptoria tritici field strains

(Submitter supplied) Septoria leaf blotch is a worldwide threat for wheat and mainly controlled by the application of synthetic fungicides. The fungal pathogen responsible for this disease, Zymoseptoria tritici, was shown as highly adaptable to its host plant, but also to fungicide challenge. Over the past decades it developed resistance to most fungicides due to target site modifications. Recently isolated strains showed cross-resistance to diverse fungicides and to unrelated drugs, suggesting a resistance mechanism that seems rarer in phytopathogenic fungi, known as multidrug resistance (MDR) in other organisms. more...
Organism:
Zymoseptoria tritici
Type:
Expression profiling by high throughput sequencing
Platform:
GPL18273
12 Samples
Download data: TXT
Series
Accession:
GSE58672
ID:
200058672
2.

Transcriptome sequencing at early stage infection of the wheat pathogen Zymoseptoria tritici reveals chromosomal differences in transcription patterns and host specific gene expression.

(Submitter supplied) We have applied whole transcriptome profiling to infer genetic determinants of pathogenicity and host specialization in Z. tritici. Our data includes RNAseq data from early infection stages of a compatible (wheat) and a non-compatible host (Brachypodium distachyon). Overall transcription of AC genes is remarkably lower than genes on core chromosomes (CC) and only 40% of the genes are transcribed. We identify 31 AC and 1069 CC genes showing plant specific expression. more...
Organism:
Zymoseptoria tritici
Type:
Expression profiling by high throughput sequencing
Platform:
GPL18273
3 Samples
Download data: TXT
Series
Accession:
GSE54874
ID:
200054874
3.

Illumina HiSeq 2000 (Zymoseptoria tritici)

Organism:
Zymoseptoria tritici
2 Series
15 Samples
Download data
Platform
Accession:
GPL18273
ID:
100018273
4.

MDR6 strain replicate 3

Organism:
Zymoseptoria tritici
Source name:
wheat
Platform:
GPL18273
Series:
GSE58672
Download data: TXT
Sample
Accession:
GSM1416741
ID:
301416741
5.

MDR6 strain replicate 2

Organism:
Zymoseptoria tritici
Source name:
wheat
Platform:
GPL18273
Series:
GSE58672
Download data: TXT
Sample
Accession:
GSM1416740
ID:
301416740
6.

MDR6 strain replicate 1

Organism:
Zymoseptoria tritici
Source name:
wheat
Platform:
GPL18273
Series:
GSE58672
Download data: TXT
Sample
Accession:
GSM1416739
ID:
301416739
7.

MDR7 strain replicate 3

Organism:
Zymoseptoria tritici
Source name:
wheat
Platform:
GPL18273
Series:
GSE58672
Download data: TXT
Sample
Accession:
GSM1416738
ID:
301416738
8.

MDR7 strain replicate 2

Organism:
Zymoseptoria tritici
Source name:
wheat
Platform:
GPL18273
Series:
GSE58672
Download data: TXT
Sample
Accession:
GSM1416737
ID:
301416737
9.

MDR7 strain replicate 1

Organism:
Zymoseptoria tritici
Source name:
wheat
Platform:
GPL18273
Series:
GSE58672
Download data: TXT
Sample
Accession:
GSM1416736
ID:
301416736
10.

sensitive control 2 replicate 3

Organism:
Zymoseptoria tritici
Source name:
wheat
Platform:
GPL18273
Series:
GSE58672
Download data: TXT
Sample
Accession:
GSM1416735
ID:
301416735
11.

sensitive control 2 replicate 2

Organism:
Zymoseptoria tritici
Source name:
wheat
Platform:
GPL18273
Series:
GSE58672
Download data: TXT
Sample
Accession:
GSM1416734
ID:
301416734
12.

sensitive control 2 replicate 1

Organism:
Zymoseptoria tritici
Source name:
wheat
Platform:
GPL18273
Series:
GSE58672
Download data: TXT
Sample
Accession:
GSM1416733
ID:
301416733
13.

sensitive control 1 replicate 3

Organism:
Zymoseptoria tritici
Source name:
wheat
Platform:
GPL18273
Series:
GSE58672
Download data: TXT
Sample
Accession:
GSM1416732
ID:
301416732
14.

sensitive control 1 replicate 2

Organism:
Zymoseptoria tritici
Source name:
wheat
Platform:
GPL18273
Series:
GSE58672
Download data: TXT
Sample
Accession:
GSM1416731
ID:
301416731
15.

sensitive control 1 replicate 1

Organism:
Zymoseptoria tritici
Source name:
wheat
Platform:
GPL18273
Series:
GSE58672
Download data: TXT
Sample
Accession:
GSM1416730
ID:
301416730
16.

IPO323_Bd

Organism:
Zymoseptoria tritici
Source name:
infected B. distachyon leaf
Platform:
GPL18273
Series:
GSE54874
Download data: TXT
Sample
Accession:
GSM1325468
ID:
301325468
17.

IPO323_Ta

Organism:
Zymoseptoria tritici
Source name:
infected wheat leaf
Platform:
GPL18273
Series:
GSE54874
Download data: TXT
Sample
Accession:
GSM1325467
ID:
301325467
18.

IPO323_YMS

Organism:
Zymoseptoria tritici
Source name:
yeast cells
Platform:
GPL18273
Series:
GSE54874
Download data: TXT
Sample
Accession:
GSM1325466
ID:
301325466
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