GPL21139[Accession] - GEO DataSets

Select item 2000750181.

Large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination at the IgH locus in a cell-type specific manner

(Submitter supplied) In this study, we compare the chromatin structure of the Ig heavy (IgH) chain locus (performing MNase digestion) in three murine cell types rendered recombinationally inactive by loss of a RAG recombinase: (i) RAG2-/- Pro-B cell lines, where the entire IgH locus is poised and available for recombination, (ii) RAG1-/- Pro-T cell lines, lymphoid cells where the IgH locus is partly open but the V region does not rearrange, (iii) recombinationally inactive RAG2-/- mouse embryonic fibroblasts (MEFs), where the entire IgH locus is in a closed conformation and unavailable for rearrangement. more...

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by genome tiling array

Platform:: GPL21139
6 Samples

Download data: PAIR

Series

Accession:: GSE75018

ID:: 200075018

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000211392.

NimbleGen Mouse ChIP-chip Array [090826_MM9_JD_ChIP_HX1]

(Submitter supplied) Annotation based on the UCSC mm9 assembly genome. The 50-mer probes were selected every 20 bases with no repeat masking, for both forward and reverse. Protocol: see manufacturer's web site www.nimblegen.com

Organism:: Mus musculus

1 Series
6 Samples

Download data: NDF, POS

Platform

Accession:: GPL21139

ID:: 100021139

Select item 3019408883.

Pro-T.2 mono

Organism:: Mus musculus

Source name:: mononucleosomal DNA from p53-/- Rag1-/- pro-T cells (channel 1) MNased digested bare genomic DNA from p53-/- Rag1-/- pro-T cells (channel 2)

Platform:: GPL21139
Series:: GSE75018

Download data: PAIR

Sample

Accession:: GSM1940888

ID:: 301940888

Select item 3019408874.

Pro-T.1 mono

Organism:: Mus musculus

Source name:: mononucleosomal DNA from p53-/- Rag1-/- pro-T cells (channel 1) MNased digested bare genomic DNA from p53-/- Rag1-/- pro-T cells (channel 2)

Platform:: GPL21139
Series:: GSE75018

Download data: PAIR

Sample

Accession:: GSM1940887

ID:: 301940887

Select item 3019408865.

MEFs.2 mono

Organism:: Mus musculus

Source name:: mononucleosomal DNA from Rag2-/- MEFs (channel 1) MNased digested bare genomic DNA from Rag2-/- MEFs (channel 2)

Platform:: GPL21139
Series:: GSE75018

Download data: PAIR

Sample

Accession:: GSM1940886

ID:: 301940886

Select item 3019408856.

MEFs.1 mono

Organism:: Mus musculus

Source name:: mononucleosomal DNA from Rag2-/- MEFs (channel 1) MNased digested bare genomic DNA from Rag2-/- MEFs (channel 2)

Platform:: GPL21139
Series:: GSE75018

Download data: PAIR

Sample

Accession:: GSM1940885

ID:: 301940885

Select item 3019408847.

Pro-B.2 mono

Organism:: Mus musculus

Source name:: mononucleosomal DNA from Rag2-/- pro-B Abelson-transformed cell line (channel 1) MNased digested bare genomic DNA from Rag2-/- pro-B Abelson-transformed cell line (channel 2)

Platform:: GPL21139
Series:: GSE75018

Download data: PAIR

Sample

Accession:: GSM1940884

ID:: 301940884

Select item 3019408838.

Pro-B.1 mono

Organism:: Mus musculus

Source name:: mononucleosomal DNA from Rag2-/- pro-B Abelson-transformed cell line (channel 1) MNased digested bare genomic DNA from Rag2-/- pro-B Abelson-transformed cell line (channel 2)

Platform:: GPL21139
Series:: GSE75018

Download data: PAIR

Sample

Accession:: GSM1940883

ID:: 301940883

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