GSE101482[Accession] - GEO DataSets - NCBI

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Select item 2001014821.

ATAC-seq profiling of open chromatin in the root tips of four plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) and two Arabidopsis thaliana cell types (root hair and non-hair epidermal cells)

(Submitter supplied) The transcriptional regulatory structure of plant genomes remains poorly defined relative to that of animals. It has been unclear how many cis-regulatory elements generally exist in plant genomes, where these elements lie in relation to their target promoters, and how these features are conserved across species. We employed the Assay for Transposase-Accessible Chromatin with sequencing (ATAC-seq) in four different plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) to delineate open chromatin regions and transcription factor (TF) binding sites across each genome. more...

Organism:: Medicago truncatula; Oryza sativa; Arabidopsis thaliana; Solanum lycopersicum

Type:: Genome binding/occupancy profiling by high throughput sequencing

5 related Platforms
15 Samples

Download data: BED

Series

Accession:: GSE101482

ID:: 200101482

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000217622.

Illumina NextSeq 500 (Solanum lycopersicum)

Organism:: Solanum lycopersicum

41 Series
496 Samples

Platform

Accession:: GPL21762

ID:: 100021762

Select item 1000216433.

Illumina NextSeq 500 (Medicago truncatula)

Organism:: Medicago truncatula

7 Series
312 Samples

Platform

Accession:: GPL21643

ID:: 100021643

Select item 1000210874.

Illumina NextSeq 500 (Oryza sativa)

Organism:: Oryza sativa

21 Series
167 Samples

Platform

Accession:: GPL21087

ID:: 100021087

Select item 1000195805.

Illumina NextSeq 500 (Arabidopsis thaliana)

Organism:: Arabidopsis thaliana

406 Series
9367 Samples

Platform

Accession:: GPL19580

ID:: 100019580

Select item 1000131606.

Illumina HiSeq 2000 (Oryza sativa)

Organism:: Oryza sativa

116 Series
1890 Samples

Platform

Accession:: GPL13160

ID:: 100013160

Select item 3027042647.

Os_root.tip.ATAC_rep2

Organism:: Oryza sativa

Source name:: Root tip

Platform:: GPL21087
Series:: GSE101482

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Sample

Accession:: GSM2704264

ID:: 302704264

SRA Run Selector

Select item 3027042638.

Os_root.tip.ATAC_rep1

Organism:: Oryza sativa

Source name:: Root tip

Platform:: GPL13160
Series:: GSE101482

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Sample

Accession:: GSM2704263

ID:: 302704263

SRA Run Selector

Select item 3027042609.

Mt_root.tip.ATAC_rep2

Organism:: Medicago truncatula

Source name:: Root tip

Platform:: GPL21643
Series:: GSE101482

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Sample

Accession:: GSM2704260

ID:: 302704260

SRA Run Selector

Select item 30270425910.

Mt_root.tip.ATAC_rep1

Organism:: Medicago truncatula

Source name:: Root tip

Platform:: GPL21643
Series:: GSE101482

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Sample

Accession:: GSM2704259

ID:: 302704259

SRA Run Selector

Select item 30270426211.

Sl_root.tip.ATAC_rep2

Organism:: Solanum lycopersicum

Source name:: Root tip

Platform:: GPL21762
Series:: GSE101482

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Sample

Accession:: GSM2704262

ID:: 302704262

SRA Run Selector

Select item 30270426112.

Sl_root.tip.ATAC_rep1

Organism:: Solanum lycopersicum

Source name:: Root tip

Platform:: GPL21762
Series:: GSE101482

Download data: BED

Sample

Accession:: GSM2704261

ID:: 302704261

SRA Run Selector

Select item 30270426913.

At_genomic.DNA.ATAC

Organism:: Arabidopsis thaliana

Source name:: Purified genomic DNA

Platform:: GPL19580
Series:: GSE101482

Sample

Accession:: GSM2704269

ID:: 302704269

SRA Run Selector

Select item 30270426814.

At_root.hair.cell.ATAC_rep2

Organism:: Arabidopsis thaliana

Source name:: Root hair cell

Platform:: GPL19580
Series:: GSE101482

Download data: BED

Sample

Accession:: GSM2704268

ID:: 302704268

SRA Run Selector

Select item 30270426715.

At_root.hair.cell.ATAC_rep1

Organism:: Arabidopsis thaliana

Source name:: Root hair cell

Platform:: GPL19580
Series:: GSE101482

Download data: BED

Sample

Accession:: GSM2704267

ID:: 302704267

SRA Run Selector

Select item 30270426616.

At_root.non.hair.cell.ATAC_rep2

Organism:: Arabidopsis thaliana

Source name:: Root non-hair cell

Platform:: GPL19580
Series:: GSE101482

Download data: BED

Sample

Accession:: GSM2704266

ID:: 302704266

SRA Run Selector

Select item 30270426517.

At_root.non.hair.cell.ATAC_rep1

Organism:: Arabidopsis thaliana

Source name:: Root non-hair cell

Platform:: GPL19580
Series:: GSE101482

Download data: BED

Sample

Accession:: GSM2704265

ID:: 302704265

SRA Run Selector

Select item 30270425818.

At_root.tip.ATAC_Crude_rep2

Organism:: Arabidopsis thaliana

Source name:: Root tip

Platform:: GPL19580
Series:: GSE101482

Download data: BED

Sample

Accession:: GSM2704258

ID:: 302704258

SRA Run Selector

Select item 30270425719.

At_root.tip.ATAC_Crude_rep1

Organism:: Arabidopsis thaliana

Source name:: Root tip

Platform:: GPL19580
Series:: GSE101482

Download data: BED

Sample

Accession:: GSM2704257

ID:: 302704257

SRA Run Selector

Select item 30270425620.

At_root.tip.ATAC_rep2

Organism:: Arabidopsis thaliana

Source name:: Root tip

Platform:: GPL19580
Series:: GSE101482

Download data: BED

Sample

Accession:: GSM2704256

ID:: 302704256

SRA Run Selector

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