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Items: 11

1.

quanTIseq: quantifying immune contexture of human tumors

(Submitter supplied) We introduce quanTIseq, a method to quantify the tumor immune contexture, determined by the type and density of tumor-infiltrating immune cells. quanTIseq is based on a novel deconvolution algorithm for RNA sequencing data that was validated with independent data sets. Complementing the deconvolution output with image data from tissue slides enables in silico multiplexed immunodetection and provides an efficient method for the immunophenotyping of a large number of tumor samples.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL16791
9 Samples
Download data: TXT
Series
Accession:
GSE107572
ID:
200107572

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina HiSeq 2500 (Homo sapiens)

Organism:
Homo sapiens
12374 Series
351960 Samples
Download data
Platform
Accession:
GPL16791
ID:
100016791

3.

Blood-derived immune-cell mixture from donor 12

Organism:
Homo sapiens
Source name:
PBMC/PMN cell mixture derived from blood sample
Platform:
GPL16791
Series:
GSE107572
Download data
Sample
Accession:
GSM2871607
ID:
302871607

SRA Run Selector

4.

Blood-derived immune-cell mixture from donor 10

Organism:
Homo sapiens
Source name:
PBMC/PMN cell mixture derived from blood sample
Platform:
GPL16791
Series:
GSE107572
Download data
Sample
Accession:
GSM2871606
ID:
302871606

SRA Run Selector

5.

Blood-derived immune-cell mixture from donor 9

Organism:
Homo sapiens
Source name:
PBMC/PMN cell mixture derived from blood sample
Platform:
GPL16791
Series:
GSE107572
Download data
Sample
Accession:
GSM2871605
ID:
302871605

SRA Run Selector

6.

Blood-derived immune-cell mixture from donor 7

Organism:
Homo sapiens
Source name:
PBMC/PMN cell mixture derived from blood sample
Platform:
GPL16791
Series:
GSE107572
Download data
Sample
Accession:
GSM2871604
ID:
302871604

SRA Run Selector

7.

Blood-derived immune-cell mixture from donor 6

Organism:
Homo sapiens
Source name:
PBMC/PMN cell mixture derived from blood sample
Platform:
GPL16791
Series:
GSE107572
Download data
Sample
Accession:
GSM2871603
ID:
302871603

SRA Run Selector

8.

Blood-derived immune-cell mixture from donor 5

Organism:
Homo sapiens
Source name:
PBMC/PMN cell mixture derived from blood sample
Platform:
GPL16791
Series:
GSE107572
Download data
Sample
Accession:
GSM2871602
ID:
302871602

SRA Run Selector

9.

Blood-derived immune-cell mixture from donor 4

Organism:
Homo sapiens
Source name:
PBMC/PMN cell mixture derived from blood sample
Platform:
GPL16791
Series:
GSE107572
Download data
Sample
Accession:
GSM2871601
ID:
302871601

SRA Run Selector

10.

Blood-derived immune-cell mixture from donor 2

Organism:
Homo sapiens
Source name:
PBMC/PMN cell mixture derived from blood sample
Platform:
GPL16791
Series:
GSE107572
Download data
Sample
Accession:
GSM2871600
ID:
302871600

SRA Run Selector

11.

Blood-derived immune-cell mixture from donor 1

Organism:
Homo sapiens
Source name:
PBMC/PMN cell mixture derived from blood sample
Platform:
GPL16791
Series:
GSE107572
Download data
Sample
Accession:
GSM2871599
ID:
302871599

SRA Run Selector

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db=gds|term=GSE107572[Accession]|query=1|qty=2|blobid=MCID_679491313ebf211704345ba3|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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