GSE129034[Accession] - GEO DataSets - NCBI

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Comparison of chromatin accessibility between human and non-human primates

(Submitter supplied) Evolution of transcriptional regulation is thought to be a major cause of the evolution of phenotypic traits. We compared DNase I Hypersensitive sites in fibroblast cells from five primates (human, chimpanzee, gorilla, orangutan, and macaque). We identified approximately 90,000 DHS sites, of which 59% are not significantly different between species, 27% are differential and likely due to a single evolutionary change, and 14% are differential and likely due to multiple changes. more...

Organism:: Gorilla gorilla; Pongo pygmaeus; Pan troglodytes; Macaca mulatta; Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

7 related Platforms
15 Samples

Download data: BED

Series

Accession:: GSE129034

ID:: 200129034

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000263672.

Illumina HiSeq 2000 (Pongo pygmaeus)

Organism:: Pongo pygmaeus

1 Series
3 Samples

Platform

Accession:: GPL26367

ID:: 100026367

Select item 1000216503.

Illumina HiSeq 2000 (Gorilla gorilla)

Organism:: Gorilla gorilla

3 Series
13 Samples

Platform

Accession:: GPL21650

ID:: 100021650

Select item 1000138024.

Illumina Genome Analyzer IIx (Pan troglodytes)

Organism:: Pan troglodytes

6 Series
29 Samples

Platform

Accession:: GPL13802

ID:: 100013802

Select item 1000137665.

Illumina Genome Analyzer IIx (Macaca mulatta)

Organism:: Macaca mulatta

15 Series
92 Samples

Platform

Accession:: GPL13766

ID:: 100013766

Select item 1000093786.

Illumina Genome Analyzer II (Pan troglodytes)

Organism:: Pan troglodytes

18 Series
121 Samples

Platform

Accession:: GPL9378

ID:: 100009378

Select item 1000091607.

Illumina Genome Analyzer II (Macaca mulatta)

Organism:: Macaca mulatta

17 Series
129 Samples

Platform

Accession:: GPL9160

ID:: 100009160

Select item 1000091158.

Illumina Genome Analyzer II (Homo sapiens)

Organism:: Homo sapiens

755 Series
6121 Samples

Platform

Accession:: GPL9115

ID:: 100009115

Select item 3036919979.

Chimpanzee replicate 2

Organism:: Pan troglodytes

Source name:: Skin fibroblast cells

Platform:: GPL13802
Series:: GSE129034

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Sample

Accession:: GSM3691997

ID:: 303691997

SRA Run Selector

Select item 30369200410.

Orangutan replicate 3

Organism:: Pongo pygmaeus

Source name:: Skin fibroblast cells

Platform:: GPL26367
Series:: GSE129034

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Sample

Accession:: GSM3692004

ID:: 303692004

SRA Run Selector

Select item 30369200311.

Orangutan replicate 2

Organism:: Pongo pygmaeus

Source name:: Skin fibroblast cells

Platform:: GPL26367
Series:: GSE129034

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Sample

Accession:: GSM3692003

ID:: 303692003

SRA Run Selector

Select item 30369200212.

Orangutan replicate 1

Organism:: Pongo pygmaeus

Source name:: Skin fibroblast cells

Platform:: GPL26367
Series:: GSE129034

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Sample

Accession:: GSM3692002

ID:: 303692002

SRA Run Selector

Select item 30369199513.

Human replicate 3

Organism:: Homo sapiens

Source name:: Skin fibroblast cells

Platform:: GPL9115
Series:: GSE129034

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Sample

Accession:: GSM3691995

ID:: 303691995

SRA Run Selector

Select item 30369199414.

Human replicate 2

Organism:: Homo sapiens

Source name:: Skin fibroblast cells

Platform:: GPL9115
Series:: GSE129034

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Sample

Accession:: GSM3691994

ID:: 303691994

SRA Run Selector

Select item 30369199315.

Human replicate 1

Organism:: Homo sapiens

Source name:: Skin fibroblast cells

Platform:: GPL9115
Series:: GSE129034

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Sample

Accession:: GSM3691993

ID:: 303691993

SRA Run Selector

Select item 30369200516.

Macaque replicate 1

Organism:: Macaca mulatta

Source name:: Skin fibroblast cells

Platform:: GPL13766
Series:: GSE129034

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Sample

Accession:: GSM3692005

ID:: 303692005

SRA Run Selector

Select item 30369199817.

Chimpanzee replicate 3

Organism:: Pan troglodytes

Source name:: Skin fibroblast cells

Platform:: GPL9378
Series:: GSE129034

Download data: BED

Sample

Accession:: GSM3691998

ID:: 303691998

SRA Run Selector

Select item 30369199618.

Chimpanzee replicate 1

Organism:: Pan troglodytes

Source name:: Skin fibroblast cells

Platform:: GPL9378
Series:: GSE129034

Download data: BED

Sample

Accession:: GSM3691996

ID:: 303691996

SRA Run Selector

Select item 30369200719.

Macaque replicate 3

Organism:: Macaca mulatta

Source name:: Skin fibroblast cells

Platform:: GPL9160
Series:: GSE129034

Download data: BED

Sample

Accession:: GSM3692007

ID:: 303692007

SRA Run Selector

Select item 30369200620.

Macaque replicate 2

Organism:: Macaca mulatta

Source name:: Skin fibroblast cells

Platform:: GPL9160
Series:: GSE129034

Download data: BED

Sample

Accession:: GSM3692006

ID:: 303692006

SRA Run Selector

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