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Items: 1 to 20 of 23

1.

Arabidopsis RNA Polymerase IV generates 21-22 nucleotide small RNAs that can participate in RNA-directed DNA methylation and may regulate genes

(Submitter supplied) Canonically, Arabidopsis RNA Polymerase IV (Pol IV) is known to produce heterochromatic small RNAs (typically 23-24 nucleotide in length) that maintain silencing of transposable elements (TEs). In contrast, when TEs are transcriptionally activated and produce Pol II transcripts, these transcripts are degraded into 21-22 nt small RNAs (sRNAs) known to participate in post transcriptional gene silencing. more...
Organism:
Arabidopsis thaliana
Type:
Other; Non-coding RNA profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platforms:
GPL17639 GPL19580 GPL21785
19 Samples
Download data: TSV
Series
Accession:
GSE133618
ID:
200133618
2.

Illumina HiSeq 4000 (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
272 Series
6867 Samples
Download data
Platform
Accession:
GPL21785
ID:
100021785
3.

Illumina NextSeq 500 (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
390 Series
8865 Samples
Download data
Platform
Accession:
GPL19580
ID:
100019580
4.

Illumina HiSeq 2500 (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
794 Series
14149 Samples
Download data
Platform
Accession:
GPL17639
ID:
100017639
5.

pol IV sRNA - replicate B

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL21785
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM4148764
ID:
304148764
6.

pol IV mock-IP sRNA replicate B

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL21785
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913314
ID:
303913314
7.

pol IV mock-IP sRNA replicate A

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL21785
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913313
ID:
303913313
8.

pol IV AGO1-IP sRNA replicate B

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL21785
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913312
ID:
303913312
9.

pol IV AGO1-IP sRNA replicate A

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL21785
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913311
ID:
303913311
10.

wt Col mock-IP sRNA replicate B

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL21785
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913310
ID:
303913310
11.

wt Col mock-IP sRNA replicate A

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL21785
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913309
ID:
303913309
12.

wt Col AGO1-IP sRNA replicate B

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL21785
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913308
ID:
303913308
13.

wt Col AGO1-IP sRNA replicate A

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL21785
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913307
ID:
303913307
14.

rdr1/rdr2/rdr6 sRNA - replicate A

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL21785
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913305
ID:
303913305
15.

dcl2/dcl3/dcl4 sRNA

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL21785
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913302
ID:
303913302
16.

dcl4 sRNA

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL17639
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM4148765
ID:
304148765
17.

rdr1 sRNA

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL17639
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913303
ID:
303913303
18.

dcl2/dcl4 sRNA

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL17639
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913301
ID:
303913301
19.

wt Col sRNA - replicate D

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds
Platform:
GPL17639
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM3913299
ID:
303913299
20.

dcl3 methylC-seq - replicate B

Organism:
Arabidopsis thaliana
Source name:
inflorescence (stage 1-12) immature flower buds.
Platform:
GPL19580
Series:
GSE133618
Download data: TSV
Sample
Accession:
GSM4148767
ID:
304148767
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Supplemental Content

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