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Items: 1 to 20 of 45

1.

Screening for copy-number alterations and LOH in CLL - a comparative study of four microarray platforms

(Submitter supplied) Screening for gene copy-number alterations (CNAs) has improved by applying genome-wide microarrays, where SNP arrays also allow analysis of loss of heterozygozity (LOH). We here analyzed 10 chronic lymphocytic leukemia (CLL) samples using four different high-resolution platforms: BAC arrays (32K), oligonucleotide arrays (185K, Agilent), and two SNP arrays (250K, Affymetrix and 317K, Illumina). Cross-platform comparison revealed 29 concordantly detected CNAs, including known recurrent alterations, which confirmed that all platforms are powerful tools when screening for large aberrations. more...
Organism:
Homo sapiens
Type:
Genome variation profiling by SNP array; Genome variation profiling by genome tiling array
4 related Platforms
40 Samples
Download data: CEL, CHP, GPR, TXT
Series
Accession:
GSE13557
ID:
200013557
2.

Illumina HumanHap300-Duov2 Genotyping BeadChip (HumanHap300v2_A)

(Submitter supplied) over 318,000 tag SNPs derived from Phase I HapMap data Protocol: See manufacturer's website
Organism:
Homo sapiens
7 Series
1 Related Platform
312 Samples
Download data: CSV
Platform
Accession:
GPL6980
ID:
100006980
3.

Agilent Homo sapiens 185K array

(Submitter supplied) see manufacturer's web site at http://www.agilent.com/ Test array -- final design is Agilent-014068
Organism:
Homo sapiens
2 Series
17 Samples
Download data
Platform
Accession:
GPL5149
ID:
100005149
4.

SWEGENE_BAC_32K_Full

(Submitter supplied) The 32k BAC Re-Array set Ver. 1.0 (32,433 BAC clones) was obtained from the BACPAC Resource Center at Children's Hospital Oakland Research Institute, Oakland (CA, US). The average resolution of the whole genome tiling clone set is 46kb. Clones were mapped to human genome build 17 (UCSC Human Genome Browser) Protocol: Arrays were produced using amplified genomic DNA from BAC clones. Amplification was performed using degenerate oligonucleotide primed PCR and products were purified by size-exclusion filtration and verified by agarose gel electrophoresis. more...
Organism:
Homo sapiens
22 Series
1274 Samples
Download data
Platform
Accession:
GPL4723
ID:
100004723
5.

[Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Mapping 500K Array Set provides consistently high coverage across different populations. It is comprised of two arrays, each capable of genotyping on average 250,000 SNPs (approximately 262,000 for Nsp arrays and 238,000 for Sty arrays). more...
Organism:
Homo sapiens
193 Series
11192 Samples
Download data
Platform
Accession:
GPL3718
ID:
100003718
6.

9_Affymetrix

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL3718
Series:
GSE13557
Download data: CEL, CHP
Sample
Accession:
GSM337751
ID:
300337751
7.

1_Affymetrix

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL3718
Series:
GSE13557
Download data: CEL, CHP
Sample
Accession:
GSM337750
ID:
300337750
8.

6_Affymetrix

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL3718
Series:
GSE13557
Download data: CEL, CHP
Sample
Accession:
GSM337749
ID:
300337749
9.

2_Affymetrix

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL3718
Series:
GSE13557
Download data: CEL, CHP
Sample
Accession:
GSM337748
ID:
300337748
10.

3_Affymetrix

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL3718
Series:
GSE13557
Download data: CEL, CHP
Sample
Accession:
GSM337747
ID:
300337747
11.

10_Affymetrix

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL3718
Series:
GSE13557
Download data: CEL, CHP
Sample
Accession:
GSM337746
ID:
300337746
12.

7_Affymetrix

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL3718
Series:
GSE13557
Download data: CEL, CHP
Sample
Accession:
GSM337745
ID:
300337745
13.

8_Affymetrix

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL3718
Series:
GSE13557
Download data: CEL, CHP
Sample
Accession:
GSM337744
ID:
300337744
14.

5_Affymetrix

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL3718
Series:
GSE13557
Download data: CEL, CHP
Sample
Accession:
GSM337743
ID:
300337743
15.

4_Affymetrix

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL3718
Series:
GSE13557
Download data: CEL, CHP
Sample
Accession:
GSM337742
ID:
300337742
16.

9_Illumina

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL6980
Series:
GSE13557
Download data
Sample
Accession:
GSM322229
ID:
300322229
17.

1_Illumina

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL6980
Series:
GSE13557
Download data
Sample
Accession:
GSM322228
ID:
300322228
18.

6_Illumina

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL6980
Series:
GSE13557
Download data
Sample
Accession:
GSM322227
ID:
300322227
19.

2_Illumina

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL6980
Series:
GSE13557
Download data
Sample
Accession:
GSM322226
ID:
300322226
20.

3_Illumina

Organism:
Homo sapiens
Source name:
Blood
Platform:
GPL6980
Series:
GSE13557
Download data
Sample
Accession:
GSM322225
ID:
300322225
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