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Items: 8

1.

BRIN-BD11 pancreatic beta cell mRNA profile upon treatment with Class1 HDAC inhibitor MS-275

(Submitter supplied) Methods: We performed mRNA sequence analysis by deep sequencing, in triplicate, using Illumina HiSeq to assess the impact of Class1 HDAC inhibitor MS-275 in regulating gene expression in BRIN-BD11 pancreatic beta cells. The transcriptome libraries were constructed using the NEB adapters and were sequenced on at 150 nucleotide read length using the paired-end chemistry. The raw reads were subjected to Adapter and low quality reads removal by Trimmomatic -0.36v. more...
Organism:
Rattus norvegicus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL25947
6 Samples
Download data: TXT
Series
Accession:
GSE139147
ID:
200139147

SRA Run Selector

2.

Illumina NovaSeq 6000 (Rattus norvegicus)

Organism:
Rattus norvegicus
602 Series
12522 Samples
Download data
Platform
Accession:
GPL25947
ID:
100025947

3.

MS-275 treated repeat3

Organism:
Rattus norvegicus
Source name:
BRIN-BD11 (ECACC 10033003) pancreatic beta cell line
Platform:
GPL25947
Series:
GSE139147
Download data: TXT
Sample
Accession:
GSM4131970
ID:
304131970

SRA Run Selector

4.

MS-275 treated repeat2

Organism:
Rattus norvegicus
Source name:
BRIN-BD11 (ECACC 10033003) pancreatic beta cell line
Platform:
GPL25947
Series:
GSE139147
Download data: TXT
Sample
Accession:
GSM4131969
ID:
304131969

SRA Run Selector

5.

MS-275 treated repeat1

Organism:
Rattus norvegicus
Source name:
BRIN-BD11 (ECACC 10033003) pancreatic beta cell line
Platform:
GPL25947
Series:
GSE139147
Download data: TXT
Sample
Accession:
GSM4131968
ID:
304131968

SRA Run Selector

6.

WT repeat3

Organism:
Rattus norvegicus
Source name:
BRIN-BD11 (ECACC 10033003) pancreatic beta cell line
Platform:
GPL25947
Series:
GSE139147
Download data: TXT
Sample
Accession:
GSM4131967
ID:
304131967

SRA Run Selector

7.

WT repeat2

Organism:
Rattus norvegicus
Source name:
BRIN-BD11 (ECACC 10033003) pancreatic beta cell line
Platform:
GPL25947
Series:
GSE139147
Download data: TXT
Sample
Accession:
GSM4131966
ID:
304131966

SRA Run Selector

8.

WT repeat1

Organism:
Rattus norvegicus
Source name:
BRIN-BD11 (ECACC 10033003) pancreatic beta cell line
Platform:
GPL25947
Series:
GSE139147
Download data: TXT
Sample
Accession:
GSM4131965
ID:
304131965

SRA Run Selector

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