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Items: 1 to 20 of 51

1.

Histone H2B.8 compacts flowering plant sperm through chromatin phase separation

(Submitter supplied) We characterised a sperm-expressed histone variant, H2B.8 in Arabidopsis by performing ChIP-seq, RNA-seq, and Hi-C. The data show that H2B.8 is exclusively deposited to unexpressed euchromatin and that gene expression is not significantly affected either by h2b.8 mutation in sperm or overexpression in soma. The deposition of H2B.8increases the contact probability of short range intrachromosomal interactions and contacts between pericentomeric regions and chromosome arms of different chromosomes.
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other
Platforms:
GPL19580 GPL23157
48 Samples
Download data: BED, BW, MATRIX, TXT
Series
Accession:
GSE161366
ID:
200161366
2.

HiSeq X Ten (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
203 Series
2845 Samples
Download data
Platform
Accession:
GPL23157
ID:
100023157
3.

Illumina NextSeq 500 (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
392 Series
9008 Samples
Download data
Platform
Accession:
GPL19580
ID:
100019580
4.

H2B8_seedling_Hi-C_rep2

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL23157
Series:
GSE161366
Download data: TXT
Sample
Accession:
GSM5941849
ID:
305941849
5.

WT_seedling_Hi-C_rep2

Organism:
Arabidopsis thaliana
Source name:
WT seedling
Platform:
GPL23157
Series:
GSE161366
Download data: TXT
Sample
Accession:
GSM5941848
ID:
305941848
6.

H2B8_seedling_Hi-C

Organism:
Arabidopsis thaliana
Source name:
35Sp::H2B.8-eGFP seedling
Platform:
GPL23157
Series:
GSE161366
Download data: MATRIX, TXT
Sample
Accession:
GSM5227622
ID:
305227622
7.

WT_seedling_Hi-C

Organism:
Arabidopsis thaliana
Source name:
WT seedling
Platform:
GPL23157
Series:
GSE161366
Download data: MATRIX, TXT
Sample
Accession:
GSM5227621
ID:
305227621
8.

H2B8 ChIP-seq input rep 2 (50% PEG drought)

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL19580
Series:
GSE161366
Download data
Sample
Accession:
GSM5941875
ID:
305941875
9.

H2B8 ChIP-seq input rep 2 (PBS control)

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL19580
Series:
GSE161366
Download data
Sample
Accession:
GSM5941874
ID:
305941874
10.

H2B8 ChIP-seq input rep 1 (50% PEG drought)

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL19580
Series:
GSE161366
Download data
Sample
Accession:
GSM5941873
ID:
305941873
11.

H2B8 ChIP-seq input rep 1 (PBS control)

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL19580
Series:
GSE161366
Download data
Sample
Accession:
GSM5941872
ID:
305941872
12.

H2B8 anti-GFP ChIP-seq rep 2 (50% PEG drought)

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL19580
Series:
GSE161366
Download data: BW
Sample
Accession:
GSM5941871
ID:
305941871
13.

H2B8 anti-GFP ChIP-seq rep 2 (PBS control)

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL19580
Series:
GSE161366
Download data: BW
Sample
Accession:
GSM5941870
ID:
305941870
14.

H2B8 anti-GFP ChIP-seq rep 1 (50% PEG drought)

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL19580
Series:
GSE161366
Download data: BW
Sample
Accession:
GSM5941869
ID:
305941869
15.

H2B8 anti-GFP ChIP-seq rep 1 (PBS control)

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL19580
Series:
GSE161366
Download data: BW
Sample
Accession:
GSM5941868
ID:
305941868
16.

H2B8 seedling 50% PEG drought stress RNA-seq replicate 2

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL19580
Series:
GSE161366
Download data
Sample
Accession:
GSM5941867
ID:
305941867
17.

H2B8 seedling 50% PEG drought stress RNA-seq replicate 1

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL19580
Series:
GSE161366
Download data
Sample
Accession:
GSM5941866
ID:
305941866
18.

H2B8 seedling PBS control RNA-seq replicate 2

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL19580
Series:
GSE161366
Download data
Sample
Accession:
GSM5941865
ID:
305941865
19.

H2B8 seedling PBS control RNA-seq replicate 1

Organism:
Arabidopsis thaliana
Source name:
p35S::H2B.8-eGFP seedling
Platform:
GPL19580
Series:
GSE161366
Download data
Sample
Accession:
GSM5941864
ID:
305941864
20.

WT seedling 50% PEG drought stress RNA-seq replicate 2

Organism:
Arabidopsis thaliana
Source name:
WT seedling
Platform:
GPL19580
Series:
GSE161366
Download data
Sample
Accession:
GSM5941863
ID:
305941863
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Supplemental Content

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