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Items: 1 to 20 of 30

1.

Cohesin-dependent chromosome loop extrusion is limited by transcription and stalled replication forks [Hi-C]

(Submitter supplied) Genome function depends on regulated chromosome folding, and loop extrusion by the protein complex cohesin is essential for this multilayered organization. The chromosomal positioning of cohesin is controlled by transcription, and the complex also localizes to stalled replication forks. However, the role of transcription and replication in chromosome looping remains unclear. Here, we show that reduction of chromosome-bound RNA polymerase weakens normal cohesin loop extrusion boundaries, allowing cohesin to form new long-range chromosome cis interactions. more...
Organism:
Saccharomyces cerevisiae
Type:
Other
Platform:
GPL26171
28 Samples
Download data: HIC
Series
Accession:
GSE162193
ID:
200162193

PubMed Full text in PMC Similar studies SRA Run Selector

2.

HiSeq X Ten (Saccharomyces cerevisiae)

Organism:
Saccharomyces cerevisiae
32 Series
484 Samples
Download data
Platform
Accession:
GPL26171
ID:
100026171

3.

rpb1-1, 37°C [KJ39]

Organism:
Saccharomyces cerevisiae
Source name:
rpb1-1
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM5746909
ID:
305746909

SRA Run Selector

4.

rpb1-1, 37°C [KJ38]

Organism:
Saccharomyces cerevisiae
Source name:
rpb1-1
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM5746908
ID:
305746908

SRA Run Selector

5.

WT, 37°C [KJ37]

Organism:
Saccharomyces cerevisiae
Source name:
WT
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM5746907
ID:
305746907

SRA Run Selector

6.

WT, 37°C [KJ36]

Organism:
Saccharomyces cerevisiae
Source name:
WT
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM5746906
ID:
305746906

SRA Run Selector

7.

WT, HU, aux/dox [KJ31]

Organism:
Saccharomyces cerevisiae
Source name:
WT
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM5746905
ID:
305746905

SRA Run Selector

8.

WT, HU, aux/dox [KJ30]

Organism:
Saccharomyces cerevisiae
Source name:
WT
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM5746904
ID:
305746904

SRA Run Selector

9.

Scc2-AID, aux/dox, thiolutin [KJ29]

Organism:
Saccharomyces cerevisiae
Source name:
Scc2-AID
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM5746903
ID:
305746903

SRA Run Selector

10.

Scc2-AID, aux/dox, thiolutin [KJ28]

Organism:
Saccharomyces cerevisiae
Source name:
Scc2-AID
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM5746902
ID:
305746902

SRA Run Selector

11.

WT, aux/dox, thiolutin [KJ27]

Organism:
Saccharomyces cerevisiae
Source name:
WT
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM5746901
ID:
305746901

SRA Run Selector

12.

WT, aux/dox, DMSO [KJ26]

Organism:
Saccharomyces cerevisiae
Source name:
WT
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM5746900
ID:
305746900

SRA Run Selector

13.

WT, aux/dox, thiolutin [KJ25]

Organism:
Saccharomyces cerevisiae
Source name:
WT
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM5746899
ID:
305746899

SRA Run Selector

14.

WT, aux/dox, DMSO [KJ24]

Organism:
Saccharomyces cerevisiae
Source name:
WT
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM5746898
ID:
305746898

SRA Run Selector

15.

Wpl1-AID, HU, aux/dox [KJ23]

Organism:
Saccharomyces cerevisiae
Source name:
Wpl1-AID
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM4946281
ID:
304946281

SRA Run Selector

16.

Scc2-AID, HU, aux/dox [KJ22]

Organism:
Saccharomyces cerevisiae
Source name:
Scc2-AID
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM4946280
ID:
304946280

SRA Run Selector

17.

WT, HU [KJ20]

Organism:
Saccharomyces cerevisiae
Source name:
WT
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM4946279
ID:
304946279

SRA Run Selector

18.

Scc2-AID, aux/dox, thiolutin [KJ19]

Organism:
Saccharomyces cerevisiae
Source name:
Scc2-AID
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM4946278
ID:
304946278

SRA Run Selector

19.

Scc2-AID, aux/dox, DMSO [KJ18]

Organism:
Saccharomyces cerevisiae
Source name:
Scc2-AID
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM4946277
ID:
304946277

SRA Run Selector

20.

Wpl1-AID, aux/dox, thiolutin [KJ17]

Organism:
Saccharomyces cerevisiae
Source name:
Wpl1-AID
Platform:
GPL26171
Series:
GSE162193 GSE162194
Download data: HIC
Sample
Accession:
GSM4946276
ID:
304946276

SRA Run Selector

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db=gds|term=GSE162193[Accession]|query=1|qty=2|blobid=MCID_678bc67ff521160690885f9e|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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