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Items: 1 to 20 of 21

1.

Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD [human ChIP-seq]

(Submitter supplied) Active DNA demethylation, the enzymatic removal of methyl groups from DNA initially triggered by their successive oxidation, is a fundamental process critical to regulating cellular identity. The major enzymes involved in this process have been recently elucidated, but other important components in this pathway and the independent contributions of oxidized 5-methylcytosine derivatives to the regulation of gene expression remain unclear. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL24676
19 Samples
Download data: NARROWPEAK
Series
Accession:
GSE228704
ID:
200228704
2.

Illumina NovaSeq 6000 (Homo sapiens)

Platform
Accession:
GPL24676
ID:
100024676
3.

IMR90 anti-MBD3

Organism:
Homo sapiens
Source name:
IMR90
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data: NARROWPEAK
Sample
Accession:
GSM7135358
ID:
307135358
4.

MCF7 anti-MBD3

Organism:
Homo sapiens
Source name:
MCF-7
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data: NARROWPEAK
Sample
Accession:
GSM7135357
ID:
307135357
5.

HEPG2 anti-MBD3

Organism:
Homo sapiens
Source name:
HepG2
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data: NARROWPEAK
Sample
Accession:
GSM7135356
ID:
307135356
6.

HEK293 TDG-N140A anti-MBD3

Organism:
Homo sapiens
Source name:
HEK293
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data: NARROWPEAK
Sample
Accession:
GSM7135355
ID:
307135355
7.

HEK293 TDGKO anti-MBD3

Organism:
Homo sapiens
Source name:
HEK293
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data: NARROWPEAK
Sample
Accession:
GSM7135354
ID:
307135354
8.

HEK293 anti-MBD3

Organism:
Homo sapiens
Source name:
HEK293
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data: NARROWPEAK
Sample
Accession:
GSM7135353
ID:
307135353
9.

HEK293 anti-FLAG negative control (no FLAG-TDG)

Organism:
Homo sapiens
Source name:
HEK293
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data: NARROWPEAK
Sample
Accession:
GSM7135352
ID:
307135352
10.

IMR90 input for FLAG-TDG-N140A-CD and MBD3

Organism:
Homo sapiens
Source name:
IMR90
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data
Sample
Accession:
GSM7135351
ID:
307135351
11.

IMR90 FLAG-TDG-N140A-CD

Organism:
Homo sapiens
Source name:
IMR90
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data: NARROWPEAK
Sample
Accession:
GSM7135350
ID:
307135350
12.

MCF7 input for FLAG-TDG-N140A-CD and MBD3

Organism:
Homo sapiens
Source name:
MCF-7
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data
Sample
Accession:
GSM7135349
ID:
307135349
13.

MCF7 FLAG-TDG-N140A-CD

Organism:
Homo sapiens
Source name:
MCF-7
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data: NARROWPEAK
Sample
Accession:
GSM7135348
ID:
307135348
14.

HEPG2 input for FLAG-TDG-N140A-CD and MBD3

Organism:
Homo sapiens
Source name:
HepG2
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data
Sample
Accession:
GSM7135347
ID:
307135347
15.

HEPG2 FLAG-TDG-N140A-CD

Organism:
Homo sapiens
Source name:
HepG2
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data: NARROWPEAK
Sample
Accession:
GSM7135346
ID:
307135346
16.

HEK293 input for FLAG-TDG-N140A-CD replicate 3

Organism:
Homo sapiens
Source name:
HEK293
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data
Sample
Accession:
GSM7135345
ID:
307135345
17.

HEK293 input for FLAG-TDG-N140A-CD replicate 2

Organism:
Homo sapiens
Source name:
HEK293
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data
Sample
Accession:
GSM7135344
ID:
307135344
18.

HEK293 input for FLAG-TDG-N140A-CD replicate 1

Organism:
Homo sapiens
Source name:
HEK293
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data
Sample
Accession:
GSM7135343
ID:
307135343
19.

HEK293 FLAG-TDG-N140A-CD replicate 3

Organism:
Homo sapiens
Source name:
HEK293
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data: NARROWPEAK
Sample
Accession:
GSM7135342
ID:
307135342
20.

HEK293 FLAG-TDG-N140A-CD replicate 2

Organism:
Homo sapiens
Source name:
HEK293
Platform:
GPL24676
Series:
GSE228704 GSE228707
Download data: NARROWPEAK
Sample
Accession:
GSM7135341
ID:
307135341
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Supplemental Content

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