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Items: 14

1.

Improved RNA stability estimation through Bayesian modeling reveals most bacterial transcripts have sub-minute half-lives [CLIP-seq]

(Submitter supplied) RNA decay is a crucial mechanism for regulating gene expression in response to environmental stresses. In bacteria, RNA-binding proteins (RBPs) are known to be involved in post-transcriptional regulation, but their global impact on RNA half-lives has not been extensively studied. To shed light on the role of the major RBPs ProQ and CspC/E in maintaining RNA stability, we performed RNA sequencing of Salmonella enterica over a time course following treatment with the transcription initiation inhibitor rifampicin (RIF-seq) in the presence and absence of these RBPs. more...
Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Type:
Other
Platform:
GPL21220
12 Samples
Download data: CSV, GFF
Series
Accession:
GSE234007
ID:
200234007
2.

Illumina NextSeq 500 (Salmonella enterica subsp. enterica serovar Typhimurium)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
13 Series
125 Samples
Download data
Platform
Accession:
GPL21220
ID:
100021220
3.

CspE CLIP-seq, not UV-crosslinked, biol rep 3 (Sample 12)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
Download data
Sample
Accession:
GSM7440466
ID:
307440466
4.

CspE CLIP-seq, UV-crosslinked, biol rep 3 (Sample 11)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
Download data
Sample
Accession:
GSM7440465
ID:
307440465
5.

CspE CLIP-seq, not UV-crosslinked, biol rep 2 (Sample 10)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
Download data
Sample
Accession:
GSM7440464
ID:
307440464
6.

CspE CLIP-seq, UV-crosslinked, biol rep 2 (Sample 9)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
Download data
Sample
Accession:
GSM7440463
ID:
307440463
7.

CspE CLIP-seq, not UV-crosslinked, biol rep 1 (Sample 8)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
Download data
Sample
Accession:
GSM7440462
ID:
307440462
8.

CspE CLIP-seq, UV-crosslinked, biol rep 1 (Sample 7)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
Download data
Sample
Accession:
GSM7440461
ID:
307440461
9.

CspC CLIP-seq, not UV-crosslinked, biol rep 3 (Sample 6)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
Download data
Sample
Accession:
GSM7440460
ID:
307440460
10.

CspC CLIP-seq, UV-crosslinked, biol rep 3 (Sample 5)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
Download data
Sample
Accession:
GSM7440459
ID:
307440459
11.

CspC CLIP-seq, not UV-crosslinked, biol rep 2 (Sample 4)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
Download data
Sample
Accession:
GSM7440458
ID:
307440458
12.

CspC CLIP-seq, UV-crosslinked, biol rep 2 (Sample 3)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
Download data
Sample
Accession:
GSM7440457
ID:
307440457
13.

CspC CLIP-seq, not UV-crosslinked, biol rep 1 (Sample 2)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
Download data
Sample
Accession:
GSM7440456
ID:
307440456
14.

CspC CLIP-seq, UV-crosslinked, biol rep 1 (Sample 1)

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium
Source name:
SL1344
Platform:
GPL21220
Series:
GSE234007 GSE234010
Download data
Sample
Accession:
GSM7440455
ID:
307440455
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Supplemental Content

db=gds|term=GSE234007[Accession]|query=1|qty=2|blobid=MCID_669fc64356cb0a044e2e7448|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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